We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CTXN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CTXN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:420.3 nTPM
HPA Brain:549.4 nTPM
GTEx:420.3 nTPM
FANTOM5:310.0 Scaled Tags Per Million
Pig:439.0 nTPM
Mouse:601.9 nTPM
Allen mouse:25.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.4
Sample id Sample description nTPM
Amygdala
nTPM: 224.0
2517 Female, age 94, left hemisphere 442.4
1987 Female, age 91, left hemisphere 308.4
2514 Male, age 75, right hemisphere 268.6
2695 Female, age 67, right hemisphere 65.4
2814 Male, age 76, right hemisphere 35.3
Basal amygdala
nTPM: 549.4
2243 Female, age 91, right hemisphere 787.9
2685 Female, age 94, left hemisphere 675.2
2827 Female, age 67, right hemisphere 614.7
2110 Male, age 80, left hemisphere 506.7
2609 Male, age 75, right hemisphere 477.7
1955 Male, age 76, both hemispheres 234.0
Central amygdala
nTPM: 348.8
2826 Female, age 94, left hemisphere 681.2
2239 Male, age 80, left hemisphere 463.8
2701 Female, age 91, right hemisphere 321.2
2515 Male, age 75, right hemisphere 256.6
1905 Male, age 76, both hemispheres 21.3
Corticomedial amygdala
nTPM: 521.6
2242 Female, age 91, right hemisphere 923.0
2829 Male, age 80, left hemisphere 679.6
2535 Female, age 67, right hemisphere 629.7
2428 Male, age 75, right hemisphere 360.5
2429 Female, age 94, left hemisphere 321.1
2240 Male, age 76, both hemispheres 215.4
Lateral amygdala
nTPM: 378.6
2534 Female, age 94, left hemisphere 636.8
2255 Female, age 91, right hemisphere 492.0
2256 Male, age 80, left hemisphere 459.2
2830 Female, age 67, right hemisphere 331.2
2516 Male, age 75, right hemisphere 221.1
1883 Male, age 76, both hemispheres 131.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 420.3
Samples: 181

Max nTPM: 1323.0
Min nTPM: 130.1
Std nTPM: 195.0
Median nTPM: 383.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1323.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1301.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1153.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 981.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 962.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 946.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 838.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 830.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 813.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 735.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 720.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 707.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 682.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 669.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 669.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 660.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 656.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 640.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 632.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 629.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 616.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 610.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 607.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 590.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 581.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 575.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 573.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 568.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 560.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 558.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 557.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 556.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 551.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 550.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 549.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 548.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 546.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 536.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 532.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 526.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 524.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 521.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 520.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 519.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 514.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 513.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 504.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 502.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 499.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 493.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 492.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 490.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 489.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 474.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 468.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 462.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 460.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 458.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 456.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 446.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 445.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 443.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 443.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 440.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 439.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 438.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 438.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 435.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 435.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 431.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 430.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 428.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 426.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 425.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 420.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 419.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 418.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 409.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 406.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 405.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 403.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 403.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 403.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 402.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 399.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 396.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 393.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 389.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 385.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 383.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 383.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 382.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 381.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 380.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 379.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 372.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 371.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 370.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 368.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 367.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 366.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 366.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 365.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 365.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 361.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 358.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 358.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 352.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 352.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 348.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 343.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 340.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 338.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 336.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 336.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 335.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 335.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 333.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 331.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 327.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 325.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 322.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 317.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 317.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 312.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 311.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 311.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 309.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 308.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 307.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 302.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 302.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 298.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 296.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 295.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 294.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 292.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 286.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 283.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 277.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 276.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 273.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 272.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 268.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 267.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 267.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 266.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 258.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 250.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 249.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 249.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 248.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 247.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 245.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 243.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 242.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 238.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 233.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 232.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 232.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 230.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 228.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 227.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 222.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 221.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 221.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 220.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 211.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 201.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 196.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 191.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 176.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 161.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 157.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 156.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 149.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 136.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 132.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 130.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

310.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 310.0
FF:10151-102I7 76 years, female 310.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.0
Pig sample Sample description nTPM
Amygdala
nTPM: 439.0
Samples: 4

Max nTPM: 607.3
Min nTPM: 285.5
Sample A Female 607.3
Sample B Female 285.5
Sample C Male 453.2
Sample D Male 410.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

601.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 601.9
Samples: 4

Max nTPM: 648.1
Min nTPM: 558.8
Sample A Male 558.8
Sample B Male 608.2
Sample C Female 648.1
Sample D Female 592.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 26.1
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 24.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo