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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:147.2 nTPM
HPA Brain:237.8 nTPM
GTEx:147.2 nTPM
FANTOM5:488.3 Scaled Tags Per Million
Pig:136.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 204.1
2565 Male, age 75, midline 278.2
1981 Female, age 72, midline 196.8
2194 Female, age 79, both hemispheres 191.4
2816 Male, age 47, midline 189.1
2048 Male, age 55, midline 165.2
Cervical spinal cord, dorsal horn
nTPM: 237.8
2721 Male, age 90, both hemispheres 308.6
2297 Male, age 75, both hemispheres 302.3
2069 Male, age 47, both hemispheres 226.8
1877 Male, age 55, unknown 210.6
2173 Female, age 72, unknown 204.5
2296 Male, age 66, both hemispheres 174.4
Cervical spinal cord, ventral horn
nTPM: 220.5
2809 Male, age 90, both hemispheres 243.8
2295 Male, age 66, both hemispheres 240.9
2480 Male, age 75, both hemispheres 237.8
2098 Female, age 72, unknown 218.2
2068 Male, age 55, unknown 192.2
2820 Female, age 79, both hemispheres 190.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 147.2
Samples: 204

Max nTPM: 300.7
Min nTPM: 71.6
Std nTPM: 35.5
Median nTPM: 140.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 300.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 293.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 258.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 245.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 237.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 216.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 214.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 211.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 211.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 211.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 206.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 201.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 199.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 197.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 195.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 193.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 192.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 192.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 192.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 190.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 189.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 188.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 187.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 187.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 187.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 186.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 184.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 183.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 181.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 181.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 181.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 180.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 180.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 180.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 179.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 176.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 175.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 175.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 174.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 173.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 172.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 171.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 171.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 171.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 169.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 168.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 168.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 167.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 167.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 166.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 165.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 165.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 165.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 164.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 163.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 163.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 163.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 163.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 162.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 162.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 162.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 162.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 162.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 162.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 161.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 160.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 160.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 159.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 159.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 159.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 155.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 155.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 155.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 154.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 153.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 152.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 151.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 150.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 149.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 149.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 148.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 148.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 148.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 148.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 147.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 146.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 146.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 145.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 144.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 144.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 143.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 142.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 141.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 140.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 140.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 140.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 139.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 139.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 139.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 139.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 138.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 138.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 138.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 138.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 138.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 137.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 137.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 137.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 136.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 136.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 134.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 133.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 133.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 132.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 132.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 131.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 130.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 130.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 130.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 130.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 129.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 129.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 128.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 128.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 127.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 127.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 127.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 126.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 126.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 126.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 125.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 124.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 123.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 123.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 123.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 123.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 123.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 122.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 122.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 121.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 121.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 121.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 120.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 120.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 119.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 119.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 119.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 118.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 117.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 116.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 116.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 115.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 114.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 113.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 113.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 113.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 113.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 112.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 112.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 111.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 111.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 110.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 110.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 110.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 109.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 108.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 106.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 106.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 106.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 105.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 103.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 103.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 103.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 101.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 100.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 97.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 97.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 94.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 91.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 86.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 82.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 81.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 78.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 71.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

488.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 488.3
FF:10181-103D1 60 years, female 663.2
FF:10159-103A6 76 years, female 313.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 146.6
Min nTPM: 82.6
Sample A Female 146.6
Sample B Female 85.0
Sample C Male 82.6
Sample D Male 122.9
Ventral spinal cord
nTPM: 136.4
Samples: 4

Max nTPM: 162.3
Min nTPM: 89.9
Sample A Female 159.1
Sample B Female 134.2
Sample C Male 162.3
Sample D Male 89.9

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