MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:276.6 nTPM
HPA Brain:230.2 nTPM
GTEx:276.6 nTPM
FANTOM5:138.2 Scaled Tags Per Million
Pig:172.2 nTPM
Mouse:484.9 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 230.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.6
2019 Male, age 18, unknown 243.5
1827 Male, age 72, unknown 178.3
2586 Male, age 75, left hemisphere 173.0
2219 Male, age 76, both hemispheres 170.0
2828 Female, age 72, unknown 169.7
1833 Male, age 53, unknown 165.8
2411 Female, age 72, unknown 162.4
1870 Female, age 42, unknown 161.8
2666 Male, age 74, left hemisphere 152.5
1830 Male, age 51, unknown 148.9
Dorsal raphe nucleus
nTPM: 181.2
1828 Male, age 53, unknown 214.9
2298 Female, age 72, unknown 195.5
2047 Male, age 72, unknown 186.6
2750 Male, age 76, both hemispheres 168.5
2016 Female, age 72, unknown 140.6
Inferior colliculus
nTPM: 181.2
1890 Male, age 53, unknown 202.0
2097 Female, age 72, unknown 191.2
1848 Female, age 42, unknown 182.2
2849 Male, age 72, unknown 149.3
Median raphe nucleus
nTPM: 167.7
2220 Male, age 76, midline 167.7
Periaquaductal grey, anterior
nTPM: 166.3
1947 Male, age 18, unknown 174.7
1795 Male, age 51, unknown 170.3
2502 Female, age 75, unknown 154.0
Periaquaductal grey, dorsal
nTPM: 143.9
1831 Male, age 72, unknown 155.5
2850 Male, age 76, both hemispheres 150.4
1840 Male, age 53, unknown 140.2
2464 Female, age 72, unknown 129.6
Periaquaductal grey, lateral
nTPM: 156.0
2272 Male, age 74, both hemispheres 191.0
2053 Male, age 18, unknown 140.4
2140 Male, age 76, both hemispheres 136.5
Pretectal area
nTPM: 211.8
2007 Male, age 72, unknown 281.3
1817 Female, age 42, unknown 278.0
1944 Female, age 72, unknown 266.1
1816 Male, age 51, unknown 254.5
2667 Female, age 75, unknown 238.0
1815 Male, age 53, unknown 214.1
2273 Male, age 74, both hemispheres 188.8
2224 Female, age 72, unknown 163.0
2407 Male, age 75, both hemispheres 153.9
2825 Male, age 18, unknown 146.9
2316 Male, age 76, right hemisphere 145.8
Red nucleus
nTPM: 200.7
1821 Female, age 72, unknown 257.5
2725 Female, age 75, unknown 228.2
2785 Male, age 18, unknown 227.2
1865 Male, age 51, unknown 202.4
2503 Female, age 72, unknown 196.1
2823 Male, age 76, right hemisphere 193.9
2769 Male, age 72, unknown 192.7
1954 Female, age 42, unknown 192.2
2588 Male, age 74, left hemisphere 191.0
2227 Male, age 72, unknown 184.0
1904 Male, age 53, unknown 177.1
2584 Male, age 75, left hemisphere 166.5
Substantia nigra
nTPM: 230.2
1916 Female, age 42, unknown 311.2
1889 Female, age 72, unknown 261.7
1941 Male, age 53, unknown 253.8
1851 Male, age 51, unknown 243.6
2241 Male, age 72, unknown 237.7
2409 Female, age 72, unknown 234.4
2665 Male, age 74, both hemispheres 202.2
2699 Male, age 18, unknown 198.0
2590 Female, age 75, unknown 190.2
2583 Male, age 75, right hemisphere 169.3
Superior colliculus
nTPM: 172.2
2087 Female, age 72, unknown 234.9
1895 Male, age 76, right hemisphere 200.7
2587 Male, age 74, left hemisphere 187.8
1796 Male, age 53, unknown 177.2
2261 Male, age 18, unknown 175.2
2668 Female, age 75, unknown 164.9
1839 Male, age 51, unknown 156.5
2664 Male, age 75, both hemispheres 145.2
1913 Female, age 42, unknown 143.4
1995 Male, age 72, unknown 136.3
Ventral tegmental area
nTPM: 189.7
2410 Female, age 72, unknown 225.9
1915 Female, age 42, unknown 219.0
2218 Male, age 76, both hemispheres 215.4
2223 Female, age 72, unknown 173.9
1942 Male, age 51, unknown 168.2
2021 Male, age 53, unknown 136.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 276.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 276.6
Samples: 183

Max nTPM: 541.3
Min nTPM: 125.1
Std nTPM: 78.7
Median nTPM: 267.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 541.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 498.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 494.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 494.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 476.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 471.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 469.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 433.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 423.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 422.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 408.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.2
FF:10158-103A5 76 years, female 138.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 172.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.8
Samples: 4

Max nTPM: 180.4
Min nTPM: 80.5
Sample A Female 180.4
Sample B Female 83.8
Sample C Male 130.5
Sample D Male 80.5
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 184.9
Min nTPM: 116.5
Sample A Female 117.9
Sample B Female 116.5
Sample C Male 184.9
Sample D Male 145.5
Periaqueductal gray
nTPM: 107.7
Samples: 3

Max nTPM: 131.9
Min nTPM: 90.3
Sample B Female 101.0
Sample C Male 131.9
Sample D Male 90.3
Superior colliculi
nTPM: 172.2
Samples: 4

Max nTPM: 229.5
Min nTPM: 95.7
Sample A Female 214.6
Sample B Female 95.7
Sample C Male 229.5
Sample D Male 148.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 484.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 484.9
Samples: 4

Max nTPM: 503.2
Min nTPM: 462.2
Sample A Male 503.2
Sample B Male 487.2
Sample C Female 462.2
Sample D Female 487.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70445676 Antisense, RP_050614_04_D01, Mouse strain C57BL/6J (56 days, male) 10.7

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