MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA Brain:45.3 nTPM
GTEx:64.5 nTPM
FANTOM5:87.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
1870 Female, age 42, unknown 47.4
2666 Male, age 74, left hemisphere 44.3
1827 Male, age 72, unknown 43.8
2586 Male, age 75, left hemisphere 43.6
1833 Male, age 53, unknown 40.9
1830 Male, age 51, unknown 40.0
2219 Male, age 76, both hemispheres 38.2
2411 Female, age 72, unknown 37.7
2019 Male, age 18, unknown 36.3
2828 Female, age 72, unknown 35.8
Dorsal raphe nucleus
nTPM: 38.5
2298 Female, age 72, unknown 39.6
2750 Male, age 76, both hemispheres 39.1
1828 Male, age 53, unknown 38.8
2016 Female, age 72, unknown 38.8
2047 Male, age 72, unknown 36.4
Inferior colliculus
nTPM: 42.2
2097 Female, age 72, unknown 44.8
2849 Male, age 72, unknown 44.8
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 39.3
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Periaquaductal grey, anterior
nTPM: 41.3
1947 Male, age 18, unknown 47.2
2502 Female, age 75, unknown 41.1
1795 Male, age 51, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 38.9
1840 Male, age 53, unknown 41.5
2850 Male, age 76, both hemispheres 40.0
1831 Male, age 72, unknown 39.5
2464 Female, age 72, unknown 34.7
Periaquaductal grey, lateral
nTPM: 37.0
2053 Male, age 18, unknown 40.4
2140 Male, age 76, both hemispheres 39.4
2272 Male, age 74, both hemispheres 31.4
Pretectal area
nTPM: 40.4
1817 Female, age 42, unknown 45.5
2825 Male, age 18, unknown 44.0
1815 Male, age 53, unknown 43.6
1816 Male, age 51, unknown 43.3
2224 Female, age 72, unknown 42.2
2007 Male, age 72, unknown 41.9
1944 Female, age 72, unknown 41.8
2407 Male, age 75, both hemispheres 38.7
2316 Male, age 76, right hemisphere 35.3
2273 Male, age 74, both hemispheres 34.7
2667 Female, age 75, unknown 33.6
Red nucleus
nTPM: 44.1
2725 Female, age 75, unknown 57.9
2503 Female, age 72, unknown 49.6
1821 Female, age 72, unknown 47.5
1865 Male, age 51, unknown 47.2
1954 Female, age 42, unknown 45.3
2588 Male, age 74, left hemisphere 45.1
2584 Male, age 75, left hemisphere 43.2
1904 Male, age 53, unknown 40.7
2769 Male, age 72, unknown 39.4
2823 Male, age 76, right hemisphere 39.2
2227 Male, age 72, unknown 38.2
2785 Male, age 18, unknown 36.4
Substantia nigra
nTPM: 41.8
2241 Male, age 72, unknown 49.3
1916 Female, age 42, unknown 46.3
1889 Female, age 72, unknown 43.4
2699 Male, age 18, unknown 42.8
1851 Male, age 51, unknown 42.3
1941 Male, age 53, unknown 42.0
2665 Male, age 74, both hemispheres 41.3
2409 Female, age 72, unknown 38.0
2590 Female, age 75, unknown 36.8
2583 Male, age 75, right hemisphere 35.6
Superior colliculus
nTPM: 38.9
1895 Male, age 76, right hemisphere 43.2
2587 Male, age 74, left hemisphere 41.5
1839 Male, age 51, unknown 40.1
2668 Female, age 75, unknown 39.7
1796 Male, age 53, unknown 38.4
2664 Male, age 75, both hemispheres 38.3
2087 Female, age 72, unknown 37.5
1913 Female, age 42, unknown 36.9
2261 Male, age 18, unknown 36.8
1995 Male, age 72, unknown 36.4
Ventral tegmental area
nTPM: 41.4
1915 Female, age 42, unknown 44.0
2223 Female, age 72, unknown 42.2
2218 Male, age 76, both hemispheres 41.3
2410 Female, age 72, unknown 41.3
2021 Male, age 53, unknown 39.9
1942 Male, age 51, unknown 39.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 183

Max nTPM: 104.9
Min nTPM: 36.0
Std nTPM: 12.1
Median nTPM: 63.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 104.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 96.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 94.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 90.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 90.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 89.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 88.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 86.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 86.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.3
FF:10158-103A5 76 years, female 87.3

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