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  • MRFAP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:418.8 nTPM
HPA Brain:285.7 nTPM
GTEx:418.8 nTPM
FANTOM5:244.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.7
Sample id Sample description nTPM
Amygdala
nTPM: 285.7
2814 Male, age 76, right hemisphere 314.7
2695 Female, age 67, right hemisphere 288.5
2514 Male, age 75, right hemisphere 284.3
2517 Female, age 94, left hemisphere 275.8
1987 Female, age 91, left hemisphere 265.2
Basal amygdala
nTPM: 251.8
2609 Male, age 75, right hemisphere 275.4
2110 Male, age 80, left hemisphere 268.2
2243 Female, age 91, right hemisphere 267.4
2827 Female, age 67, right hemisphere 263.9
1955 Male, age 76, both hemispheres 244.0
2685 Female, age 94, left hemisphere 192.1
Central amygdala
nTPM: 282.1
2826 Female, age 94, left hemisphere 307.4
1905 Male, age 76, both hemispheres 294.6
2239 Male, age 80, left hemisphere 291.4
2515 Male, age 75, right hemisphere 270.0
2701 Female, age 91, right hemisphere 247.0
Corticomedial amygdala
nTPM: 252.9
2535 Female, age 67, right hemisphere 327.2
2242 Female, age 91, right hemisphere 269.6
2829 Male, age 80, left hemisphere 240.3
2240 Male, age 76, both hemispheres 238.5
2428 Male, age 75, right hemisphere 224.1
2429 Female, age 94, left hemisphere 217.8
Lateral amygdala
nTPM: 269.5
1883 Male, age 76, both hemispheres 293.3
2516 Male, age 75, right hemisphere 289.7
2534 Female, age 94, left hemisphere 281.3
2830 Female, age 67, right hemisphere 260.4
2255 Female, age 91, right hemisphere 253.3
2256 Male, age 80, left hemisphere 238.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 418.8
Samples: 181

Max nTPM: 781.9
Min nTPM: 253.8
Std nTPM: 87.6
Median nTPM: 399.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 781.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 781.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 711.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 666.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 651.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 644.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 635.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 625.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 612.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 599.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 578.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 570.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 564.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 562.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 537.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 536.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 522.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 519.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 512.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 511.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 509.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 508.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 506.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 505.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 503.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 501.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 498.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 496.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 495.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 490.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 488.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 481.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 480.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 478.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 474.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 470.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 470.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 470.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 469.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 465.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 464.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 461.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 461.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 457.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 456.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 452.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 450.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 448.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 447.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 447.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 446.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 446.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 441.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 440.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 437.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 437.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 434.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 433.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 430.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 429.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 428.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 428.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 428.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 427.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 426.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 426.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 425.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 425.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 421.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 421.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 420.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 420.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 419.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 418.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 418.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 418.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 417.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 415.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 415.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 415.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 414.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 411.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 411.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 410.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 408.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 405.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 403.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 403.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 401.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 401.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 399.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 399.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 398.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 398.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 397.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 397.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 396.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 396.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 394.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 394.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 393.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 393.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 391.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 391.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 390.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 387.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 386.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 385.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 384.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 384.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 384.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 384.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 383.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 383.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 382.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 381.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 381.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 380.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 380.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 378.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 378.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 376.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 376.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 374.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 374.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 374.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 373.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 367.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 367.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 365.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 364.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 363.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 362.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 362.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 362.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 360.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 359.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 359.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 358.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 356.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 355.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 354.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 352.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 352.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 349.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 348.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 348.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 347.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 346.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 344.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 343.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 343.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 342.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 341.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 339.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 339.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 338.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 338.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 337.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 336.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 334.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 333.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 333.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 327.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 326.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 325.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 325.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 324.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 323.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 319.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 318.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 316.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 316.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 316.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 314.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 303.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 300.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 283.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 282.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 275.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 253.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

244.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 244.3
FF:10151-102I7 76 years, female 244.3

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