MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:435.7 nTPM
HPA Brain:318.9 nTPM
GTEx:435.7 nTPM
FANTOM5:264.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 318.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 263.0
1870 Female, age 42, unknown 298.8
2586 Male, age 75, left hemisphere 295.5
1827 Male, age 72, unknown 283.5
2019 Male, age 18, unknown 261.3
2828 Female, age 72, unknown 261.3
2666 Male, age 74, left hemisphere 253.3
1830 Male, age 51, unknown 252.1
2411 Female, age 72, unknown 249.3
1833 Male, age 53, unknown 247.3
2219 Male, age 76, both hemispheres 227.4
Dorsal raphe nucleus
nTPM: 262.4
2750 Male, age 76, both hemispheres 295.4
2298 Female, age 72, unknown 260.3
1828 Male, age 53, unknown 259.9
2047 Male, age 72, unknown 259.5
2016 Female, age 72, unknown 237.1
Inferior colliculus
nTPM: 246.2
2097 Female, age 72, unknown 255.8
2849 Male, age 72, unknown 246.8
1848 Female, age 42, unknown 243.0
1890 Male, age 53, unknown 239.1
Median raphe nucleus
nTPM: 318.9
2220 Male, age 76, midline 318.9
Periaquaductal grey, anterior
nTPM: 266.7
1947 Male, age 18, unknown 281.3
2502 Female, age 75, unknown 269.4
1795 Male, age 51, unknown 249.5
Periaquaductal grey, dorsal
nTPM: 243.1
1840 Male, age 53, unknown 265.5
2850 Male, age 76, both hemispheres 263.7
1831 Male, age 72, unknown 223.9
2464 Female, age 72, unknown 219.4
Periaquaductal grey, lateral
nTPM: 242.1
2140 Male, age 76, both hemispheres 276.1
2053 Male, age 18, unknown 227.7
2272 Male, age 74, both hemispheres 222.6
Pretectal area
nTPM: 273.8
1817 Female, age 42, unknown 298.5
2007 Male, age 72, unknown 297.3
1815 Male, age 53, unknown 289.0
1816 Male, age 51, unknown 285.5
2825 Male, age 18, unknown 276.7
1944 Female, age 72, unknown 272.5
2224 Female, age 72, unknown 270.7
2667 Female, age 75, unknown 265.8
2407 Male, age 75, both hemispheres 265.3
2316 Male, age 76, right hemisphere 251.4
2273 Male, age 74, both hemispheres 239.4
Red nucleus
nTPM: 283.4
2503 Female, age 72, unknown 334.8
2725 Female, age 75, unknown 318.0
1821 Female, age 72, unknown 301.3
1865 Male, age 51, unknown 286.6
1954 Female, age 42, unknown 284.6
2588 Male, age 74, left hemisphere 279.9
2785 Male, age 18, unknown 271.4
2584 Male, age 75, left hemisphere 269.1
2227 Male, age 72, unknown 265.8
1904 Male, age 53, unknown 264.4
2823 Male, age 76, right hemisphere 262.8
2769 Male, age 72, unknown 261.8
Substantia nigra
nTPM: 281.7
1916 Female, age 42, unknown 345.6
2241 Male, age 72, unknown 325.9
1851 Male, age 51, unknown 308.6
1941 Male, age 53, unknown 296.6
1889 Female, age 72, unknown 290.2
2699 Male, age 18, unknown 281.6
2665 Male, age 74, both hemispheres 273.8
2590 Female, age 75, unknown 252.1
2409 Female, age 72, unknown 224.2
2583 Male, age 75, right hemisphere 218.0
Superior colliculus
nTPM: 256.0
1895 Male, age 76, right hemisphere 275.7
1796 Male, age 53, unknown 271.7
2664 Male, age 75, both hemispheres 263.9
2261 Male, age 18, unknown 261.6
1913 Female, age 42, unknown 260.0
2087 Female, age 72, unknown 259.4
2668 Female, age 75, unknown 255.3
1839 Male, age 51, unknown 250.3
1995 Male, age 72, unknown 231.9
2587 Male, age 74, left hemisphere 230.2
Ventral tegmental area
nTPM: 274.4
1915 Female, age 42, unknown 308.9
2223 Female, age 72, unknown 308.3
2218 Male, age 76, both hemispheres 290.0
1942 Male, age 51, unknown 263.6
2021 Male, age 53, unknown 244.2
2410 Female, age 72, unknown 231.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 435.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 435.7
Samples: 183

Max nTPM: 679.1
Min nTPM: 305.9
Std nTPM: 67.5
Median nTPM: 429.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 679.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 676.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 660.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 604.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 599.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 593.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 583.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 565.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 562.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 556.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 554.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 264.8
FF:10158-103A5 76 years, female 264.8

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