MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.3 nTPM
HPA Brain:95.8 nTPM
GTEx:100.3 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:154.7 nTPM
Mouse:167.8 nTPM
Allen mouse:13.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.8
2019 Male, age 18, unknown 118.0
2586 Male, age 75, left hemisphere 100.1
2411 Female, age 72, unknown 92.7
1827 Male, age 72, unknown 90.8
2828 Female, age 72, unknown 83.5
2219 Male, age 76, both hemispheres 79.8
1833 Male, age 53, unknown 74.8
1830 Male, age 51, unknown 70.4
1870 Female, age 42, unknown 69.5
2666 Male, age 74, left hemisphere 68.3
Dorsal raphe nucleus
nTPM: 84.3
2298 Female, age 72, unknown 101.7
1828 Male, age 53, unknown 94.0
2047 Male, age 72, unknown 86.1
2750 Male, age 76, both hemispheres 71.7
2016 Female, age 72, unknown 67.9
Inferior colliculus
nTPM: 85.5
2097 Female, age 72, unknown 101.8
1890 Male, age 53, unknown 90.3
1848 Female, age 42, unknown 81.3
2849 Male, age 72, unknown 68.6
Median raphe nucleus
nTPM: 67.1
2220 Male, age 76, midline 67.1
Periaquaductal grey, anterior
nTPM: 81.3
1947 Male, age 18, unknown 82.1
1795 Male, age 51, unknown 81.7
2502 Female, age 75, unknown 80.2
Periaquaductal grey, dorsal
nTPM: 65.0
2464 Female, age 72, unknown 69.2
1831 Male, age 72, unknown 64.6
1840 Male, age 53, unknown 64.4
2850 Male, age 76, both hemispheres 61.8
Periaquaductal grey, lateral
nTPM: 69.2
2272 Male, age 74, both hemispheres 81.2
2140 Male, age 76, both hemispheres 63.6
2053 Male, age 18, unknown 62.9
Pretectal area
nTPM: 92.6
2007 Male, age 72, unknown 129.1
1817 Female, age 42, unknown 121.2
1816 Male, age 51, unknown 111.6
1944 Female, age 72, unknown 105.7
2667 Female, age 75, unknown 105.1
1815 Male, age 53, unknown 94.9
2273 Male, age 74, both hemispheres 86.8
2224 Female, age 72, unknown 73.0
2316 Male, age 76, right hemisphere 65.7
2407 Male, age 75, both hemispheres 64.7
2825 Male, age 18, unknown 61.2
Red nucleus
nTPM: 88.7
2785 Male, age 18, unknown 107.6
1821 Female, age 72, unknown 104.8
2503 Female, age 72, unknown 101.7
2725 Female, age 75, unknown 92.1
1954 Female, age 42, unknown 86.6
2769 Male, age 72, unknown 86.4
1865 Male, age 51, unknown 86.2
1904 Male, age 53, unknown 84.5
2588 Male, age 74, left hemisphere 84.5
2227 Male, age 72, unknown 82.9
2823 Male, age 76, right hemisphere 81.3
2584 Male, age 75, left hemisphere 66.2
Substantia nigra
nTPM: 95.8
1916 Female, age 42, unknown 142.0
1889 Female, age 72, unknown 109.9
1851 Male, age 51, unknown 108.3
1941 Male, age 53, unknown 106.0
2665 Male, age 74, both hemispheres 92.3
2241 Male, age 72, unknown 83.5
2699 Male, age 18, unknown 82.1
2583 Male, age 75, right hemisphere 81.7
2409 Female, age 72, unknown 80.5
2590 Female, age 75, unknown 72.2
Superior colliculus
nTPM: 78.9
2087 Female, age 72, unknown 94.2
1796 Male, age 53, unknown 88.1
2668 Female, age 75, unknown 84.6
2261 Male, age 18, unknown 82.5
1895 Male, age 76, right hemisphere 79.8
2587 Male, age 74, left hemisphere 75.5
1839 Male, age 51, unknown 73.6
1995 Male, age 72, unknown 73.4
1913 Female, age 42, unknown 70.5
2664 Male, age 75, both hemispheres 66.6
Ventral tegmental area
nTPM: 87.2
2410 Female, age 72, unknown 121.9
1915 Female, age 42, unknown 102.0
2218 Male, age 76, both hemispheres 90.3
1942 Male, age 51, unknown 76.3
2223 Female, age 72, unknown 70.9
2021 Male, age 53, unknown 61.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 100.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.3
Samples: 183

Max nTPM: 189.0
Min nTPM: 41.5
Std nTPM: 24.9
Median nTPM: 97.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 189.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 167.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 167.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 159.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 155.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 151.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 149.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 148.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 145.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 144.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 154.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 124.0
Samples: 4

Max nTPM: 172.7
Min nTPM: 94.4
Sample A Female 172.7
Sample B Female 94.4
Sample C Male 129.8
Sample D Male 99.0
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 159.9
Min nTPM: 110.6
Sample A Female 129.0
Sample B Female 110.6
Sample C Male 159.9
Sample D Male 147.3
Periaqueductal gray
nTPM: 102.2
Samples: 3

Max nTPM: 118.0
Min nTPM: 89.5
Sample B Female 99.0
Sample C Male 118.0
Sample D Male 89.5
Superior colliculi
nTPM: 154.7
Samples: 4

Max nTPM: 198.4
Min nTPM: 105.2
Sample A Female 198.4
Sample B Female 105.2
Sample C Male 177.2
Sample D Male 138.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 167.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.8
Samples: 4

Max nTPM: 176.3
Min nTPM: 157.3
Sample A Male 176.0
Sample B Male 157.3
Sample C Female 161.7
Sample D Female 176.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.8
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 13.8
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 12.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo