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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.0
nTPM
HPA Brain:
11.7
nTPM
GTEx:
18.0
nTPM
FANTOM5:
32.3
Scaled Tags Per Million
Mouse:
0.0
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 8.5
2666
Male, age 74, left hemisphere
12.0
1870
Female, age 42, unknown
9.9
2019
Male, age 18, unknown
9.9
1830
Male, age 51, unknown
9.4
2219
Male, age 76, both hemispheres
8.9
2828
Female, age 72, unknown
8.8
1833
Male, age 53, unknown
8.5
2411
Female, age 72, unknown
7.9
1827
Male, age 72, unknown
6.2
2586
Male, age 75, left hemisphere
3.5
Dorsal raphe nucleus nTPM: 7.5
1828
Male, age 53, unknown
9.2
2750
Male, age 76, both hemispheres
8.6
2016
Female, age 72, unknown
7.2
2298
Female, age 72, unknown
6.6
2047
Male, age 72, unknown
6.0
Inferior colliculus nTPM: 8.2
1890
Male, age 53, unknown
9.3
2097
Female, age 72, unknown
8.8
1848
Female, age 42, unknown
7.9
2849
Male, age 72, unknown
6.9
Median raphe nucleus nTPM: 6.5
2220
Male, age 76, midline
6.5
Periaquaductal grey, anterior nTPM: 6.8
2502
Female, age 75, unknown
8.7
1947
Male, age 18, unknown
6.2
1795
Male, age 51, unknown
5.6
Periaquaductal grey, dorsal nTPM: 6.5
1831
Male, age 72, unknown
8.4
2464
Female, age 72, unknown
7.2
2850
Male, age 76, both hemispheres
6.2
1840
Male, age 53, unknown
4.0
Periaquaductal grey, lateral nTPM: 6.2
2053
Male, age 18, unknown
6.5
2272
Male, age 74, both hemispheres
6.1
2140
Male, age 76, both hemispheres
6.0
Pretectal area nTPM: 6.8
1817
Female, age 42, unknown
9.5
1815
Male, age 53, unknown
8.5
2007
Male, age 72, unknown
8.4
2667
Female, age 75, unknown
7.5
1944
Female, age 72, unknown
7.2
2825
Male, age 18, unknown
7.1
1816
Male, age 51, unknown
6.8
2316
Male, age 76, right hemisphere
6.7
2224
Female, age 72, unknown
4.8
2273
Male, age 74, both hemispheres
4.7
2407
Male, age 75, both hemispheres
3.5
Red nucleus nTPM: 11.7
1954
Female, age 42, unknown
15.3
2823
Male, age 76, right hemisphere
14.3
1821
Female, age 72, unknown
13.7
1904
Male, age 53, unknown
13.5
2503
Female, age 72, unknown
12.9
1865
Male, age 51, unknown
12.7
2227
Male, age 72, unknown
12.0
2769
Male, age 72, unknown
11.6
2588
Male, age 74, left hemisphere
11.5
2785
Male, age 18, unknown
8.8
2725
Female, age 75, unknown
8.7
2584
Male, age 75, left hemisphere
5.8
Substantia nigra nTPM: 9.2
2665
Male, age 74, both hemispheres
18.0
2409
Female, age 72, unknown
10.9
1916
Female, age 42, unknown
10.0
2699
Male, age 18, unknown
9.6
1851
Male, age 51, unknown
9.2
2241
Male, age 72, unknown
8.7
2590
Female, age 75, unknown
7.2
1889
Female, age 72, unknown
7.0
1941
Male, age 53, unknown
6.4
2583
Male, age 75, right hemisphere
4.8
Superior colliculus nTPM: 7.0
2587
Male, age 74, left hemisphere
9.9
1895
Male, age 76, right hemisphere
8.4
1913
Female, age 42, unknown
7.3
2668
Female, age 75, unknown
7.3
2087
Female, age 72, unknown
7.2
1995
Male, age 72, unknown
7.1
1839
Male, age 51, unknown
7.0
2261
Male, age 18, unknown
6.4
1796
Male, age 53, unknown
6.0
2664
Male, age 75, both hemispheres
3.2
Ventral tegmental area nTPM: 9.0
2410
Female, age 72, unknown
11.0
2021
Male, age 53, unknown
9.2
2218
Male, age 76, both hemispheres
9.0
1915
Female, age 42, unknown
8.6
2223
Female, age 72, unknown
8.6
1942
Male, age 51, unknown
7.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 18.0
Samples: 139
Max nTPM: 88.2
Min nTPM: 2.9
Std nTPM: 11.3
Median nTPM: 15.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
88.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
69.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
45.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
44.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
42.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
40.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
38.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
33.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
33.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
33.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
33.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
32.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
32.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
30.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
30.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
28.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
27.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
27.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
25.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
25.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
25.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
25.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
24.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
24.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
24.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
24.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
24.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
23.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
23.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
22.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
21.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
21.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
21.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
20.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
20.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
20.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
19.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
19.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
19.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
18.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
18.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
18.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
17.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
17.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
17.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
17.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
17.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
17.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
17.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
16.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
16.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
16.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
16.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
16.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
15.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
15.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
15.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
15.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
15.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
14.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
14.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
14.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
14.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
14.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
14.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
14.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
13.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
13.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
13.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
13.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
13.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
13.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
12.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
12.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
12.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
12.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
12.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
11.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
11.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
11.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
11.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
10.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
10.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
10.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
9.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
9.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
8.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
8.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
8.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
7.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
7.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
6.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
6.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
6.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
5.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
5.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
4.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
3.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
2.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.0
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.