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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:95.7 nTPM
HPA Brain:96.8 nTPM
GTEx:95.7 nTPM
FANTOM5:154.5 Scaled Tags Per Million
Pig:66.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 84.3
2816 Male, age 47, midline 106.6
2194 Female, age 79, both hemispheres 89.6
1981 Female, age 72, midline 77.2
2565 Male, age 75, midline 75.5
2048 Male, age 55, midline 72.4
Cervical spinal cord, dorsal horn
nTPM: 79.3
2296 Male, age 66, both hemispheres 137.6
2173 Female, age 72, unknown 103.2
1877 Male, age 55, unknown 73.2
2069 Male, age 47, both hemispheres 63.3
2721 Male, age 90, both hemispheres 50.6
2297 Male, age 75, both hemispheres 48.0
Cervical spinal cord, ventral horn
nTPM: 96.8
2820 Female, age 79, both hemispheres 117.7
2480 Male, age 75, both hemispheres 102.2
2068 Male, age 55, unknown 100.7
2295 Male, age 66, both hemispheres 97.9
2809 Male, age 90, both hemispheres 84.6
2098 Female, age 72, unknown 77.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 95.7
Samples: 204

Max nTPM: 223.9
Min nTPM: 15.7
Std nTPM: 38.8
Median nTPM: 90.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 223.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 223.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 207.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 205.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 189.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 189.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 183.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 181.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 179.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 176.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 173.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 169.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 169.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 162.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 158.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 157.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 153.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 152.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 149.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 147.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 146.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 145.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 145.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 143.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 140.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 138.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 137.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 136.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 133.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 125.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 125.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 125.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 125.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 124.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 124.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 122.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 121.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 120.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 118.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 117.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 117.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 117.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 116.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 115.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 114.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 114.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 112.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 111.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 111.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 111.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 110.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 110.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 109.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 108.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 108.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 107.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 107.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 106.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 106.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 106.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 105.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 104.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 103.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 102.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 102.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 102.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 101.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 100.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 100.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 99.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 99.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 99.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 99.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 99.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 98.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 97.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 97.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 97.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 97.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 97.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 96.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 96.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 96.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 95.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 95.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 94.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 94.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 93.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 91.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 91.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 90.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 90.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 90.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 89.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 89.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 89.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 89.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 88.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 88.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 88.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 87.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 87.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 87.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 86.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 86.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 86.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 85.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 85.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 85.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 84.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 84.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 83.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 82.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 82.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 81.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 81.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 81.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 81.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 80.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 80.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 79.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 79.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 78.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 78.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 78.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 78.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 78.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 76.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 76.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 76.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 76.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 75.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 75.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 73.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 73.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 73.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 73.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 72.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 72.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 71.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 71.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 71.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 68.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 67.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 66.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 65.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 62.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 61.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 61.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 61.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 61.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 61.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 60.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 60.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 59.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 58.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 57.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 55.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 55.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 54.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 53.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 52.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 52.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 51.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 50.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 46.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 46.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 46.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 45.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 45.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 44.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 43.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 40.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 36.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 36.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 33.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 32.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 30.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 30.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 28.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 15.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

154.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 154.5
FF:10181-103D1 60 years, female 179.5
FF:10159-103A6 76 years, female 129.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 63.9
Samples: 4

Max nTPM: 69.3
Min nTPM: 58.2
Sample A Female 67.1
Sample B Female 58.2
Sample C Male 60.8
Sample D Male 69.3
Ventral spinal cord
nTPM: 66.0
Samples: 4

Max nTPM: 74.7
Min nTPM: 58.7
Sample A Female 74.7
Sample B Female 58.7
Sample C Male 62.7
Sample D Male 67.8

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