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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.7
Sample id
Sample description
nTPM
Amygdala nTPM: 105.7
1987
Female, age 91, left hemisphere
124.2
2695
Female, age 67, right hemisphere
122.8
2514
Male, age 75, right hemisphere
95.7
2517
Female, age 94, left hemisphere
94.7
2814
Male, age 76, right hemisphere
90.8
Basal amygdala nTPM: 74.4
2609
Male, age 75, right hemisphere
102.9
2110
Male, age 80, left hemisphere
75.4
1955
Male, age 76, both hemispheres
74.3
2243
Female, age 91, right hemisphere
71.4
2685
Female, age 94, left hemisphere
68.4
2827
Female, age 67, right hemisphere
54.0
Central amygdala nTPM: 93.3
2515
Male, age 75, right hemisphere
128.3
1905
Male, age 76, both hemispheres
101.8
2826
Female, age 94, left hemisphere
94.6
2239
Male, age 80, left hemisphere
72.5
2701
Female, age 91, right hemisphere
69.5
Corticomedial amygdala nTPM: 73.8
2428
Male, age 75, right hemisphere
101.6
2242
Female, age 91, right hemisphere
84.2
2829
Male, age 80, left hemisphere
81.3
2240
Male, age 76, both hemispheres
68.7
2429
Female, age 94, left hemisphere
55.5
2535
Female, age 67, right hemisphere
51.6
Lateral amygdala nTPM: 82.7
2516
Male, age 75, right hemisphere
95.8
2256
Male, age 80, left hemisphere
90.4
1883
Male, age 76, both hemispheres
79.8
2255
Female, age 91, right hemisphere
79.8
2830
Female, age 67, right hemisphere
75.7
2534
Female, age 94, left hemisphere
74.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 51.6
Samples: 181
Max nTPM: 100.0
Min nTPM: 13.5
Std nTPM: 17.0
Median nTPM: 50.6
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
100.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
99.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
96.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
89.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
87.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
83.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
82.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
81.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
81.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
80.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
80.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
79.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
78.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
77.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
76.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
76.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
75.2
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
74.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
74.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
74.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
73.9
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
73.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
73.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
72.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
71.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
71.4
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
71.3
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
70.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
69.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
69.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
69.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
69.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
69.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
68.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
68.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
67.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
67.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
67.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
67.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
66.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
66.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
66.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
65.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
64.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
62.9
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
62.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
61.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
61.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
61.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
60.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
59.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
59.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
58.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
58.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
58.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
57.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
57.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
57.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
57.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
57.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
57.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
56.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
56.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
56.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
56.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
56.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
56.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
55.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
55.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
55.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
55.2
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
54.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
54.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
54.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
54.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
54.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
53.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
53.8
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
53.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
52.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
52.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
52.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
52.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
52.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
52.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
51.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
51.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
51.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
50.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
50.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
50.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
50.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
49.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
49.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
49.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
49.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
48.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
48.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
48.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
48.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
48.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
47.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
47.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
46.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
46.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
46.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
46.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
46.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
46.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
45.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
45.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
45.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
45.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
45.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
44.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
44.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
44.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
44.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
44.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
43.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
43.4
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
43.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
42.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
42.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
42.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
41.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
41.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
40.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
40.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
40.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
39.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
39.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
39.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
38.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
38.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
37.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
37.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
37.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
37.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
37.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
37.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
36.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
36.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
36.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
36.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
35.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
35.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
34.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
34.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
34.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
34.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
34.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
34.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
33.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
33.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
33.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
33.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
33.1
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
33.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
32.0
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
31.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
30.8
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
30.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
30.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
29.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
29.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
29.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
29.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
27.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
27.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
27.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
27.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
25.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
24.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
24.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
24.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
22.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
21.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
19.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
18.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
13.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 32.1
Samples: 4
Max nTPM: 36.3
Min nTPM: 27.9
Sample A
Female
34.8
Sample B
Female
27.9
Sample C
Male
29.3
Sample D
Male
36.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 22.6
Samples: 4
Max nTPM: 24.5
Min nTPM: 20.9
Sample A
Male
20.9
Sample B
Male
22.5
Sample C
Female
24.5
Sample D
Female
22.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
