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  • OAZ2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:100.0 nTPM
HPA Brain:76.4 nTPM
GTEx:100.0 nTPM
FANTOM5:137.5 Scaled Tags Per Million
Pig:63.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.8
2565 Male, age 75, midline 79.8
1981 Female, age 72, midline 76.8
2048 Male, age 55, midline 65.9
2816 Male, age 47, midline 64.5
2194 Female, age 79, both hemispheres 61.9
Cervical spinal cord, dorsal horn
nTPM: 76.4
2173 Female, age 72, unknown 85.9
2296 Male, age 66, both hemispheres 82.2
2721 Male, age 90, both hemispheres 82.0
2069 Male, age 47, both hemispheres 78.5
1877 Male, age 55, unknown 64.9
2297 Male, age 75, both hemispheres 64.9
Cervical spinal cord, ventral horn
nTPM: 73.0
2480 Male, age 75, both hemispheres 90.2
2809 Male, age 90, both hemispheres 77.7
2098 Female, age 72, unknown 77.5
2295 Male, age 66, both hemispheres 72.7
2068 Male, age 55, unknown 65.0
2820 Female, age 79, both hemispheres 54.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.0
Samples: 204

Max nTPM: 148.0
Min nTPM: 62.2
Std nTPM: 15.4
Median nTPM: 99.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 148.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 142.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 137.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 135.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 135.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 134.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 130.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 126.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 125.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 123.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 123.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 122.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 122.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 121.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 121.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 121.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 120.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 119.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 119.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 118.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 117.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 117.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 117.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 117.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 117.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 116.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 116.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 116.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 116.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 115.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 114.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 114.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 114.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 114.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 113.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 111.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 111.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 111.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 111.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 111.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 111.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 111.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 110.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 110.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 109.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 109.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 109.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 109.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 109.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 109.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 108.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 108.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 108.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 108.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 108.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 107.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 107.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 107.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 107.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 107.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 106.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 106.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 106.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 106.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 105.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 105.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 105.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 105.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 105.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 104.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 104.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 103.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 103.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 103.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 103.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 102.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 102.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 102.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 102.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 102.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 102.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 101.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 100.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 100.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 100.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 100.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 100.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 100.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 100.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 99.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 99.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 99.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 99.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 99.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 99.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 99.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 99.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 99.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 99.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 98.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 98.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 98.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 98.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 98.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 98.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 97.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 97.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 97.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 96.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 96.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 96.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 96.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 96.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 96.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 95.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 95.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 95.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 95.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 94.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 94.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 93.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 93.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 93.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 93.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 93.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 93.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 93.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 93.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 92.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 92.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 92.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 92.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 91.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 90.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 90.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 89.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 89.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 88.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 88.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 88.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 87.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 87.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 87.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 86.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 86.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 85.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 85.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 85.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 84.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 84.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 83.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 83.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 82.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 81.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 81.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 81.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 79.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 79.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 78.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 78.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 77.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 77.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 77.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 76.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 76.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 73.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 73.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 72.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 72.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 72.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 68.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 66.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 65.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 63.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 62.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 137.5
FF:10181-103D1 60 years, female 146.7
FF:10159-103A6 76 years, female 128.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 56.0
Samples: 4

Max nTPM: 64.6
Min nTPM: 49.0
Sample A Female 64.6
Sample B Female 49.0
Sample C Male 53.0
Sample D Male 57.3
Ventral spinal cord
nTPM: 63.6
Samples: 4

Max nTPM: 66.5
Min nTPM: 57.5
Sample A Female 65.4
Sample B Female 66.5
Sample C Male 64.8
Sample D Male 57.5

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