MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:176.7 nTPM
HPA Brain:110.5 nTPM
GTEx:176.7 nTPM
FANTOM5:343.3 Scaled Tags Per Million
Pig:204.9 nTPM
Mouse:126.5 nTPM
Allen mouse:7.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 110.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.5
2411 Female, age 72, unknown 130.4
1870 Female, age 42, unknown 116.7
2019 Male, age 18, unknown 105.7
2219 Male, age 76, both hemispheres 96.3
1833 Male, age 53, unknown 91.5
1830 Male, age 51, unknown 84.2
1827 Male, age 72, unknown 76.5
2828 Female, age 72, unknown 70.7
2666 Male, age 74, left hemisphere 62.4
2586 Male, age 75, left hemisphere 40.3
Dorsal raphe nucleus
nTPM: 103.5
2750 Male, age 76, both hemispheres 121.2
2298 Female, age 72, unknown 114.9
1828 Male, age 53, unknown 101.8
2047 Male, age 72, unknown 98.9
2016 Female, age 72, unknown 80.9
Inferior colliculus
nTPM: 87.4
2097 Female, age 72, unknown 99.7
1848 Female, age 42, unknown 91.1
1890 Male, age 53, unknown 86.5
2849 Male, age 72, unknown 72.3
Median raphe nucleus
nTPM: 106.9
2220 Male, age 76, midline 106.9
Periaquaductal grey, anterior
nTPM: 85.3
1947 Male, age 18, unknown 97.5
2502 Female, age 75, unknown 89.7
1795 Male, age 51, unknown 68.7
Periaquaductal grey, dorsal
nTPM: 72.0
2464 Female, age 72, unknown 78.6
1840 Male, age 53, unknown 75.6
2850 Male, age 76, both hemispheres 74.2
1831 Male, age 72, unknown 59.5
Periaquaductal grey, lateral
nTPM: 69.3
2272 Male, age 74, both hemispheres 84.4
2053 Male, age 18, unknown 64.1
2140 Male, age 76, both hemispheres 59.4
Pretectal area
nTPM: 88.7
2667 Female, age 75, unknown 135.9
1817 Female, age 42, unknown 103.6
2007 Male, age 72, unknown 100.8
2224 Female, age 72, unknown 97.0
2273 Male, age 74, both hemispheres 89.6
1944 Female, age 72, unknown 84.6
2316 Male, age 76, right hemisphere 83.2
1816 Male, age 51, unknown 80.7
1815 Male, age 53, unknown 78.6
2825 Male, age 18, unknown 68.7
2407 Male, age 75, both hemispheres 52.8
Red nucleus
nTPM: 101.0
1821 Female, age 72, unknown 161.9
1954 Female, age 42, unknown 129.3
1865 Male, age 51, unknown 113.6
1904 Male, age 53, unknown 108.5
2227 Male, age 72, unknown 104.5
2769 Male, age 72, unknown 102.7
2785 Male, age 18, unknown 102.5
2823 Male, age 76, right hemisphere 99.7
2503 Female, age 72, unknown 96.1
2725 Female, age 75, unknown 73.5
2588 Male, age 74, left hemisphere 72.2
2584 Male, age 75, left hemisphere 47.8
Substantia nigra
nTPM: 107.4
2241 Male, age 72, unknown 158.2
1916 Female, age 42, unknown 154.5
1851 Male, age 51, unknown 123.6
2409 Female, age 72, unknown 119.5
1941 Male, age 53, unknown 115.2
1889 Female, age 72, unknown 111.8
2699 Male, age 18, unknown 94.0
2590 Female, age 75, unknown 74.9
2665 Male, age 74, both hemispheres 64.5
2583 Male, age 75, right hemisphere 57.4
Superior colliculus
nTPM: 74.6
2587 Male, age 74, left hemisphere 102.0
1895 Male, age 76, right hemisphere 96.2
1839 Male, age 51, unknown 79.8
2668 Female, age 75, unknown 77.9
1913 Female, age 42, unknown 77.8
2087 Female, age 72, unknown 73.2
1796 Male, age 53, unknown 73.1
2261 Male, age 18, unknown 68.4
1995 Male, age 72, unknown 57.2
2664 Male, age 75, both hemispheres 40.4
Ventral tegmental area
nTPM: 110.5
2410 Female, age 72, unknown 136.2
1915 Female, age 42, unknown 124.6
2218 Male, age 76, both hemispheres 123.6
2223 Female, age 72, unknown 106.1
1942 Male, age 51, unknown 90.6
2021 Male, age 53, unknown 82.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 176.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 176.7
Samples: 183

Max nTPM: 465.9
Min nTPM: 92.9
Std nTPM: 56.9
Median nTPM: 165.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 465.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 440.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 397.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 325.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 294.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 292.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 287.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 282.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 279.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 279.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 270.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 343.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 343.3
FF:10158-103A5 76 years, female 343.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.0
Samples: 4

Max nTPM: 244.8
Min nTPM: 114.2
Sample A Female 244.8
Sample B Female 114.2
Sample C Male 135.7
Sample D Male 157.2
Midbrain
nTPM: 204.9
Samples: 4

Max nTPM: 354.5
Min nTPM: 120.7
Sample A Female 354.5
Sample B Female 188.6
Sample C Male 120.7
Sample D Male 155.9
Periaqueductal gray
nTPM: 134.1
Samples: 3

Max nTPM: 159.4
Min nTPM: 119.6
Sample B Female 159.4
Sample C Male 123.2
Sample D Male 119.6
Superior colliculi
nTPM: 181.4
Samples: 4

Max nTPM: 254.3
Min nTPM: 125.4
Sample A Female 254.3
Sample B Female 125.4
Sample C Male 166.7
Sample D Male 179.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 126.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.5
Samples: 4

Max nTPM: 130.1
Min nTPM: 123.2
Sample A Male 125.3
Sample B Male 127.4
Sample C Female 123.2
Sample D Female 130.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
74635292 Antisense, RP_060215_03_F04, Mouse strain C57BL/6J (56 days, male) 7.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo