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NPM1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • NPM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:178.0 nTPM
FANTOM5:119.9 Scaled Tags Per Million
Pig:105.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011384Antibody CAB012983
Glial cells HighHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 178.0
Samples: 300

Max nTPM: 362.3
Min nTPM: 125.6
Std nTPM: 34.3
Median nTPM: 171.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 362.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 336.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 321.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 315.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 298.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 297.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 291.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 279.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 277.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 262.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 262.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 257.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 255.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 243.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 242.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 238.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 237.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 236.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 235.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 233.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 232.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 229.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 223.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 222.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 218.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 217.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 217.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 216.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 216.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 215.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 215.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 215.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 214.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 211.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 210.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 207.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 207.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 205.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 205.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 204.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 202.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 202.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 201.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 201.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 200.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 200.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 198.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 198.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 198.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 198.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 197.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 197.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 197.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 197.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 196.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 196.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 196.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 195.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 195.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 195.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 194.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 194.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 193.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 193.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 193.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 192.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 192.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 191.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 191.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 190.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 189.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 189.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 189.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 189.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 188.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 188.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 188.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 188.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 187.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 187.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 186.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 186.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 186.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 185.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 185.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 185.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 185.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 184.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 184.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 184.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 183.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 183.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 183.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 183.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 183.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 182.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 182.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 182.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 182.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 182.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 181.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 181.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 181.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 181.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 181.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 181.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 181.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 181.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 181.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 181.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 180.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 180.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 180.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 180.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 179.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 179.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 179.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 179.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 179.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 179.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 179.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 178.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 177.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 177.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 177.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 177.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 177.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 177.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 176.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 175.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 174.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 174.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 174.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 174.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 174.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 174.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 174.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 173.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 173.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 173.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 173.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 173.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 173.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 172.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 172.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 172.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 171.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 171.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 171.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 171.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 170.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 170.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 170.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 170.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 170.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 170.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 170.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 169.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 169.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 169.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 169.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 168.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 168.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 168.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 168.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 168.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 168.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 168.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 167.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 167.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 166.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 165.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 165.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 165.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 165.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 165.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 165.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 165.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 165.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 164.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 164.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 164.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 164.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 164.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 164.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 164.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 163.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 163.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 163.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 163.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 163.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 162.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 162.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 162.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 161.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 161.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 161.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 161.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 161.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 161.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 161.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 161.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 161.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 160.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 159.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 159.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 159.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 159.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 159.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 159.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 159.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 158.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 158.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 158.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 157.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 157.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 157.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 157.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 157.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 156.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 156.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 156.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 156.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 156.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 156.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 155.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 155.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 155.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 155.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 155.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 155.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 155.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 155.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 154.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 154.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 154.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 153.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 152.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 152.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 152.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 152.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 152.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 152.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 152.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 151.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 151.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 151.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 150.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 150.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 150.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 150.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 149.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 149.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 149.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 148.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 148.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 148.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 147.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 147.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 147.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 147.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 147.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 147.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 146.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 146.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 146.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 145.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 145.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 145.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 145.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 144.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 144.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 144.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 143.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 142.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 141.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 141.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 141.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 140.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 140.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 139.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 139.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 138.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 137.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 137.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 137.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 137.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 136.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 136.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 136.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 135.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 133.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 133.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 132.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 125.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 119.9
FF:10164-103B2 76 years, female 119.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
Pig sample Sample description nTPM
Caudate
nTPM: 105.8
Samples: 4

Max nTPM: 113.7
Min nTPM: 97.2
Sample A Female 112.0
Sample B Female 100.3
Sample C Male 113.7
Sample D Male 97.2

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