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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:103.9 nTPM
HPA Brain:175.2 nTPM
GTEx:103.9 nTPM
FANTOM5:137.6 Scaled Tags Per Million
Pig:46.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.3
2194 Female, age 79, both hemispheres 171.9
2816 Male, age 47, midline 153.0
1981 Female, age 72, midline 130.1
2565 Male, age 75, midline 103.3
2048 Male, age 55, midline 103.2
Cervical spinal cord, dorsal horn
nTPM: 151.2
2296 Male, age 66, both hemispheres 216.6
2173 Female, age 72, unknown 169.0
1877 Male, age 55, unknown 152.2
2069 Male, age 47, both hemispheres 133.7
2297 Male, age 75, both hemispheres 122.4
2721 Male, age 90, both hemispheres 113.1
Cervical spinal cord, ventral horn
nTPM: 175.2
2068 Male, age 55, unknown 231.9
2820 Female, age 79, both hemispheres 216.3
2480 Male, age 75, both hemispheres 178.3
2295 Male, age 66, both hemispheres 161.6
2809 Male, age 90, both hemispheres 151.1
2098 Female, age 72, unknown 111.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 103.9
Samples: 204

Max nTPM: 267.3
Min nTPM: 21.6
Std nTPM: 45.4
Median nTPM: 98.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 267.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 264.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 258.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 256.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 241.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 230.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 227.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 222.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 220.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 199.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 187.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 181.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 177.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 174.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 170.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 168.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 158.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 158.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 157.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 153.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 152.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 152.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 149.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 149.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 148.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 146.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 146.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 145.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 145.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 144.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 143.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 135.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 134.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 132.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 132.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 131.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 131.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 130.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 129.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 128.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 127.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 127.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 126.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 125.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 125.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 125.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 124.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 124.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 121.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 121.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 120.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 120.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 120.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 116.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 116.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 114.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 113.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 112.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 112.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 111.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 110.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 107.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 106.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 106.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 106.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 106.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 104.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 104.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 104.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 103.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 102.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 102.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 101.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 101.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 100.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 100.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 99.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 99.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 98.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 98.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 98.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 97.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 97.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 97.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 96.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 95.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 94.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 94.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 93.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 93.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 93.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 93.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 92.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 92.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 91.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 90.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 89.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 89.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 89.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 89.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 87.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 87.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 85.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 85.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 83.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 83.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 83.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 82.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 81.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 80.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 80.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 80.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 80.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 78.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 77.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 76.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 75.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 74.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 73.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 73.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 73.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 72.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 72.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 71.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 69.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 67.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 67.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 65.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 65.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 65.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 65.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 65.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 65.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 63.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 63.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 63.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 62.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 61.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 60.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 59.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 59.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 58.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 56.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 56.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 56.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 55.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 54.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 52.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 50.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 50.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 50.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 49.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 47.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 45.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 45.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 43.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 42.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 41.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 40.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 40.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 39.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 38.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 36.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 30.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 21.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 137.6
FF:10181-103D1 60 years, female 179.8
FF:10159-103A6 76 years, female 95.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 46.8
Samples: 4

Max nTPM: 52.9
Min nTPM: 44.6
Sample A Female 52.9
Sample B Female 44.9
Sample C Male 44.6
Sample D Male 44.7
Ventral spinal cord
nTPM: 41.0
Samples: 4

Max nTPM: 53.2
Min nTPM: 34.0
Sample A Female 53.2
Sample B Female 34.0
Sample C Male 39.5
Sample D Male 37.3

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