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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
134.4
Sample id
Sample description
nTPM
Amygdala nTPM: 134.4
2514
Male, age 75, right hemisphere
154.6
2814
Male, age 76, right hemisphere
154.4
1987
Female, age 91, left hemisphere
147.9
2517
Female, age 94, left hemisphere
109.7
2695
Female, age 67, right hemisphere
105.3
Basal amygdala nTPM: 109.2
2609
Male, age 75, right hemisphere
140.3
1955
Male, age 76, both hemispheres
127.8
2243
Female, age 91, right hemisphere
109.8
2110
Male, age 80, left hemisphere
108.7
2685
Female, age 94, left hemisphere
90.2
2827
Female, age 67, right hemisphere
78.5
Central amygdala nTPM: 116.2
1905
Male, age 76, both hemispheres
145.1
2701
Female, age 91, right hemisphere
137.6
2239
Male, age 80, left hemisphere
118.6
2515
Male, age 75, right hemisphere
115.0
2826
Female, age 94, left hemisphere
64.9
Corticomedial amygdala nTPM: 113.2
2428
Male, age 75, right hemisphere
128.9
2242
Female, age 91, right hemisphere
120.5
2829
Male, age 80, left hemisphere
116.2
2240
Male, age 76, both hemispheres
115.1
2429
Female, age 94, left hemisphere
108.4
2535
Female, age 67, right hemisphere
90.0
Lateral amygdala nTPM: 110.8
2255
Female, age 91, right hemisphere
141.9
2516
Male, age 75, right hemisphere
131.3
1883
Male, age 76, both hemispheres
126.0
2256
Male, age 80, left hemisphere
123.8
2534
Female, age 94, left hemisphere
73.3
2830
Female, age 67, right hemisphere
68.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 71.9
Samples: 181
Max nTPM: 158.6
Min nTPM: 17.3
Std nTPM: 26.8
Median nTPM: 66.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
158.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
149.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
140.3
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
138.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
129.9
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
124.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
123.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
117.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
114.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
114.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
113.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
113.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
112.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
112.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
111.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
111.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
110.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
107.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
107.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
105.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
105.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
105.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
104.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
103.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
102.2
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
101.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
101.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
100.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
100.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
99.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
97.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
96.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
96.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
96.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
95.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
94.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
94.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
94.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
94.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
94.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
93.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
92.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
92.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
91.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
90.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
90.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
89.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
89.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
89.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
89.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
88.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
88.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
87.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
87.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
87.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
86.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
86.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
85.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
85.4
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
83.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
83.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
82.9
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
82.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
82.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
81.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
81.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
81.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
80.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
80.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
80.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
80.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
79.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
79.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
79.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
79.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
78.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
77.8
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
77.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
77.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
76.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
76.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
75.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
74.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
74.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
74.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
70.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
69.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
68.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
67.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
66.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
66.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
66.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
63.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
63.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
63.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
62.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
62.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
62.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
62.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
61.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
61.7
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
61.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
61.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
61.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
60.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
60.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
59.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
58.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
58.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
58.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
58.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
58.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
58.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
58.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
58.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
57.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
57.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
56.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
56.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
56.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
56.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
55.9
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
55.8
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
55.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
55.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
55.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
54.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
54.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
54.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
54.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
54.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
53.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
53.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
53.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
53.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
53.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
53.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
52.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
52.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
52.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
51.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
50.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
50.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
49.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
49.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
48.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
47.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
46.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
46.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
45.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
44.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
44.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
44.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
43.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
43.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
43.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
42.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
40.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
40.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
38.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
38.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
38.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
38.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
37.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
37.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
36.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
36.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
35.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
35.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
33.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
33.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
33.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
32.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
32.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
32.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
28.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
26.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
25.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
22.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
17.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
117.8
Pig sample
Sample description
nTPM
Amygdala nTPM: 117.8
Samples: 4
Max nTPM: 133.6
Min nTPM: 111.7
Sample A
Female
133.6
Sample B
Female
113.0
Sample C
Male
113.0
Sample D
Male
111.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
