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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:53.8 nTPM
HPA:5.1 nTPM
GTEx:53.8 nTPM
FANTOM5:8.4 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA014326Antibody CAB014890
Glandular cells MediumNot detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.1
overview
Male, age 65
Small intestine sample 232
nTPM: 0.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 16.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 0.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 53.8
Samples: 207

Max nTPM: 1363.0
Min nTPM: 0.0
Std nTPM: 124.2
Median nTPM: 9.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1363.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 489.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 455.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 415.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 352.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 326.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 308.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 293.8
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 277.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 253.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 248.7
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 230.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 209.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 196.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 193.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 184.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 181.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 175.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 170.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 153.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 151.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 150.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 149.5
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 146.9
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 133.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 133.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 125.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 119.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 119.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 116.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 109.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 109.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 107.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 106.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 103.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 94.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 91.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 88.6
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 85.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 83.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 78.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 76.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 75.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 66.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 65.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 64.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 64.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 63.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 63.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 61.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 59.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 56.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 54.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 51.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 50.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 49.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 48.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 47.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 47.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 47.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 46.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 38.6
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 38.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 37.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 33.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 33.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 31.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 30.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 29.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 28.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 28.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 27.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 26.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 25.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 24.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 24.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 23.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 23.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 22.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 22.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 21.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 20.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 18.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 18.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 17.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 16.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 16.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 15.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 15.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 14.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 14.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 13.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 13.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 12.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 11.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 10.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 10.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 10.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 10.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 9.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 9.5
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 9.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 9.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 9.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 8.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 8.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 8.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 7.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 7.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 7.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 7.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 6.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 6.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 5.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 5.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 5.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 5.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 5.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 4.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 4.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 3.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 2.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 0.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 0.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 0.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 0.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 0.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 0.6
GTEX-1192X-2526-SM-59868 50-59 years, male 0.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 0.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 0.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 0.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 0.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 0.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 0.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 0.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 0.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 0.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 0.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.3
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 0.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 0.2
GTEX-178AV-1226-SM-GOR11 40-49 years, male 0.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 0.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 0.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 0.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 0.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 0.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 0.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 0.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 0.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 0.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 0.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 0.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 0.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.0
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 0.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 0.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 0.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 0.0
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 0.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 0.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 0.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 0.0
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 0.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 0.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 8.4
FF:10024-101D6 15,40,85 years, mixed 8.4

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