MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:296.6 nTPM
HPA Brain:177.6 nTPM
GTEx:296.6 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:118.1 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 177.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.7
2586 Male, age 75, left hemisphere 195.9
2828 Female, age 72, unknown 195.1
2019 Male, age 18, unknown 178.8
1827 Male, age 72, unknown 161.0
2666 Male, age 74, left hemisphere 148.4
2411 Female, age 72, unknown 146.9
1870 Female, age 42, unknown 143.3
2219 Male, age 76, both hemispheres 135.2
1833 Male, age 53, unknown 120.2
1830 Male, age 51, unknown 112.5
Dorsal raphe nucleus
nTPM: 165.0
2298 Female, age 72, unknown 180.4
2750 Male, age 76, both hemispheres 174.3
2047 Male, age 72, unknown 172.5
1828 Male, age 53, unknown 164.9
2016 Female, age 72, unknown 133.0
Inferior colliculus
nTPM: 112.6
1890 Male, age 53, unknown 133.9
2097 Female, age 72, unknown 121.2
1848 Female, age 42, unknown 105.5
2849 Male, age 72, unknown 90.0
Median raphe nucleus
nTPM: 170.3
2220 Male, age 76, midline 170.3
Periaquaductal grey, anterior
nTPM: 176.2
2502 Female, age 75, unknown 198.3
1795 Male, age 51, unknown 188.2
1947 Male, age 18, unknown 142.0
Periaquaductal grey, dorsal
nTPM: 112.9
1831 Male, age 72, unknown 126.1
2464 Female, age 72, unknown 113.3
1840 Male, age 53, unknown 110.4
2850 Male, age 76, both hemispheres 101.6
Periaquaductal grey, lateral
nTPM: 117.3
2053 Male, age 18, unknown 123.9
2272 Male, age 74, both hemispheres 117.4
2140 Male, age 76, both hemispheres 110.7
Pretectal area
nTPM: 177.6
2007 Male, age 72, unknown 264.4
1816 Male, age 51, unknown 261.1
1944 Female, age 72, unknown 233.3
1817 Female, age 42, unknown 208.2
1815 Male, age 53, unknown 190.9
2667 Female, age 75, unknown 170.7
2273 Male, age 74, both hemispheres 133.6
2224 Female, age 72, unknown 128.8
2316 Male, age 76, right hemisphere 126.3
2825 Male, age 18, unknown 121.1
2407 Male, age 75, both hemispheres 114.9
Red nucleus
nTPM: 156.1
2785 Male, age 18, unknown 204.9
2588 Male, age 74, left hemisphere 186.2
2503 Female, age 72, unknown 159.8
2725 Female, age 75, unknown 156.6
2584 Male, age 75, left hemisphere 153.9
2227 Male, age 72, unknown 153.3
1821 Female, age 72, unknown 150.2
2769 Male, age 72, unknown 149.1
1904 Male, age 53, unknown 146.7
1954 Female, age 42, unknown 145.4
2823 Male, age 76, right hemisphere 137.4
1865 Male, age 51, unknown 129.2
Substantia nigra
nTPM: 166.9
2665 Male, age 74, both hemispheres 243.0
1916 Female, age 42, unknown 219.6
1889 Female, age 72, unknown 212.5
1851 Male, age 51, unknown 190.1
1941 Male, age 53, unknown 157.1
2699 Male, age 18, unknown 146.5
2583 Male, age 75, right hemisphere 138.3
2590 Female, age 75, unknown 131.0
2241 Male, age 72, unknown 118.0
2409 Female, age 72, unknown 113.4
Superior colliculus
nTPM: 160.5
2087 Female, age 72, unknown 229.3
1796 Male, age 53, unknown 183.2
2261 Male, age 18, unknown 180.9
2668 Female, age 75, unknown 168.0
2664 Male, age 75, both hemispheres 160.1
1913 Female, age 42, unknown 155.9
1995 Male, age 72, unknown 143.1
1895 Male, age 76, right hemisphere 130.1
2587 Male, age 74, left hemisphere 129.5
1839 Male, age 51, unknown 124.4
Ventral tegmental area
nTPM: 155.9
1915 Female, age 42, unknown 175.1
2218 Male, age 76, both hemispheres 172.2
1942 Male, age 51, unknown 161.7
2410 Female, age 72, unknown 152.8
2021 Male, age 53, unknown 136.9
2223 Female, age 72, unknown 136.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 296.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 296.6
Samples: 183

Max nTPM: 776.9
Min nTPM: 116.1
Std nTPM: 93.6
Median nTPM: 288.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 776.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 542.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 526.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 505.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 498.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 483.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 472.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 456.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 455.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 454.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 452.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 29.5
Min nTPM: 22.2
Sample A Female 29.5
Sample B Female 22.2
Sample C Male 23.6
Sample D Male 27.0
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 30.8
Min nTPM: 23.0
Sample A Female 30.8
Sample B Female 28.1
Sample C Male 23.0
Sample D Male 26.0
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 27.8
Min nTPM: 26.1
Sample B Female 27.8
Sample C Male 26.4
Sample D Male 26.1
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.7
Sample A Female 30.7
Sample B Female 25.7
Sample C Male 25.9
Sample D Male 28.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.2
Samples: 4

Max nTPM: 130.6
Min nTPM: 102.4
Sample A Male 130.6
Sample B Male 115.9
Sample C Female 102.4
Sample D Female 123.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68546311 Antisense, RP_050120_02_C12, Mouse strain C57BL/6J (56 days, male) 0.7
74300849 Antisense, RP_051219_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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