MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.7 nTPM
HPA Brain:14.6 nTPM
GTEx:0.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.6
2586 Male, age 75, left hemisphere 11.5
2411 Female, age 72, unknown 9.5
1870 Female, age 42, unknown 9.1
2828 Female, age 72, unknown 8.8
1830 Male, age 51, unknown 8.3
2219 Male, age 76, both hemispheres 8.3
2666 Male, age 74, left hemisphere 8.3
1827 Male, age 72, unknown 8.1
1833 Male, age 53, unknown 7.6
2019 Male, age 18, unknown 6.9
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 12.7
2298 Female, age 72, unknown 12.3
2047 Male, age 72, unknown 10.1
2016 Female, age 72, unknown 8.3
1828 Male, age 53, unknown 7.7
Inferior colliculus
nTPM: 8.7
2097 Female, age 72, unknown 10.5
1848 Female, age 42, unknown 8.4
2849 Male, age 72, unknown 8.2
1890 Male, age 53, unknown 7.7
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 11.1
1795 Male, age 51, unknown 12.2
1947 Male, age 18, unknown 10.7
2502 Female, age 75, unknown 10.4
Periaquaductal grey, dorsal
nTPM: 8.2
1840 Male, age 53, unknown 9.7
2850 Male, age 76, both hemispheres 8.0
2464 Female, age 72, unknown 7.6
1831 Male, age 72, unknown 7.5
Periaquaductal grey, lateral
nTPM: 8.6
2140 Male, age 76, both hemispheres 9.2
2272 Male, age 74, both hemispheres 8.6
2053 Male, age 18, unknown 7.8
Pretectal area
nTPM: 7.3
2224 Female, age 72, unknown 11.3
2825 Male, age 18, unknown 9.4
2273 Male, age 74, both hemispheres 8.3
2007 Male, age 72, unknown 7.5
2407 Male, age 75, both hemispheres 7.4
2667 Female, age 75, unknown 6.9
2316 Male, age 76, right hemisphere 6.5
1816 Male, age 51, unknown 6.4
1817 Female, age 42, unknown 5.9
1815 Male, age 53, unknown 5.7
1944 Female, age 72, unknown 4.8
Red nucleus
nTPM: 7.3
2584 Male, age 75, left hemisphere 10.5
2227 Male, age 72, unknown 8.5
2503 Female, age 72, unknown 8.3
2725 Female, age 75, unknown 8.1
2769 Male, age 72, unknown 8.1
2588 Male, age 74, left hemisphere 7.4
2785 Male, age 18, unknown 6.9
1954 Female, age 42, unknown 6.7
1904 Male, age 53, unknown 6.5
1821 Female, age 72, unknown 5.7
1865 Male, age 51, unknown 5.7
2823 Male, age 76, right hemisphere 4.9
Substantia nigra
nTPM: 7.2
1941 Male, age 53, unknown 8.8
2583 Male, age 75, right hemisphere 8.5
1916 Female, age 42, unknown 8.2
2665 Male, age 74, both hemispheres 8.0
2241 Male, age 72, unknown 7.4
2699 Male, age 18, unknown 7.3
2590 Female, age 75, unknown 7.1
1889 Female, age 72, unknown 6.9
1851 Male, age 51, unknown 6.7
2409 Female, age 72, unknown 3.6
Superior colliculus
nTPM: 7.6
2664 Male, age 75, both hemispheres 10.5
1796 Male, age 53, unknown 10.3
1839 Male, age 51, unknown 9.3
2261 Male, age 18, unknown 8.0
2587 Male, age 74, left hemisphere 7.5
2668 Female, age 75, unknown 7.3
1995 Male, age 72, unknown 6.0
2087 Female, age 72, unknown 6.0
1913 Female, age 42, unknown 5.9
1895 Male, age 76, right hemisphere 5.7
Ventral tegmental area
nTPM: 8.2
2021 Male, age 53, unknown 9.1
1942 Male, age 51, unknown 8.9
2218 Male, age 76, both hemispheres 8.7
1915 Female, age 42, unknown 8.2
2223 Female, age 72, unknown 7.1
2410 Female, age 72, unknown 7.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.7
Samples: 139

Max nTPM: 2.6
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 2.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 2.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 2.6
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.4
Sample C Male 1.6
Sample D Male 2.5
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 3.0
Min nTPM: 1.5
Sample B Female 3.0
Sample C Male 2.7
Sample D Male 1.5
Superior colliculi
nTPM: 2.0
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.5
Sample A Female 1.6
Sample B Female 2.8
Sample C Male 1.5
Sample D Male 2.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71724467 Antisense, RP_050927_03_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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