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RPS17
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS17
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:925.9 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:85.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055060
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

925.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 925.9
Samples: 300

Max nTPM: 2399.6
Min nTPM: 505.6
Std nTPM: 286.5
Median nTPM: 884.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2399.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2245.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2006.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1909.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1893.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1866.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1655.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1607.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1565.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1544.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1538.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1534.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1529.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1512.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1499.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1480.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1473.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1413.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1406.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1379.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1376.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1356.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1349.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1324.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1314.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1287.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1286.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1270.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1263.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1243.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1243.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1238.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1228.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1210.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1207.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1202.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1190.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1187.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1186.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1183.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1182.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1181.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1171.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1159.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1154.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1151.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1150.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1147.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1145.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1142.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1142.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1137.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1136.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1136.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1134.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1124.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1121.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1120.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1116.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1116.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1107.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1097.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1090.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1087.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1086.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1084.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1081.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1081.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1081.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1075.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1064.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1063.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1063.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1061.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1061.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1060.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1057.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1047.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1041.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1035.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1035.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1032.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1032.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1027.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1024.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1023.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1023.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1020.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1019.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1017.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1016.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1015.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1014.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1014.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1010.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1010.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1010.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1006.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 999.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 996.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 993.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 989.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 988.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 986.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 981.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 978.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 975.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 972.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 971.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 969.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 965.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 959.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 955.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 955.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 954.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 954.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 952.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 948.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 947.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 947.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 944.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 941.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 939.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 938.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 938.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 933.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 932.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 931.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 927.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 926.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 926.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 921.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 919.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 918.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 914.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 913.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 912.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 911.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 910.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 902.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 901.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 900.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 899.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 895.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 895.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 893.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 891.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 888.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 888.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 885.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 883.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 875.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 873.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 868.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 868.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 866.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 866.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 865.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 864.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 856.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 852.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 850.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 850.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 848.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 845.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 844.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 844.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 842.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 841.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 839.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 836.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 834.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 833.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 829.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 826.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 824.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 824.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 823.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 823.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 818.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 816.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 813.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 813.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 812.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 812.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 810.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 809.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 802.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 798.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 797.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 793.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 791.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 791.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 790.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 788.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 785.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 785.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 785.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 783.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 780.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 778.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 778.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 773.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 773.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 772.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 770.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 767.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 766.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 765.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 764.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 764.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 763.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 763.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 760.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 758.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 757.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 755.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 752.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 745.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 741.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 740.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 738.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 737.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 735.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 732.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 724.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 723.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 722.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 722.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 717.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 715.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 715.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 714.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 713.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 707.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 705.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 704.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 700.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 700.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 700.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 699.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 696.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 693.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 690.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 686.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 685.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 682.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 681.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 674.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 669.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 669.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 669.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 669.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 667.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 666.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 661.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 657.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 650.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 646.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 645.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 643.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 639.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 639.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 634.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 630.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 630.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 623.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 620.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 619.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 619.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 608.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 603.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 596.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 596.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 594.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 594.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 593.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 590.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 586.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 583.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 582.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 579.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 577.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 576.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 572.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 567.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 566.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 564.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 555.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 554.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 549.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 548.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 546.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 544.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 529.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 521.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 516.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 516.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 507.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 505.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.7
FF:10164-103B2 76 years, female 45.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.2
Pig sample Sample description nTPM
Caudate
nTPM: 85.2
Samples: 4

Max nTPM: 93.3
Min nTPM: 72.6
Sample A Female 85.4
Sample B Female 93.3
Sample C Male 89.4
Sample D Male 72.6

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