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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2424.4 nTPM
GTEx:2424.4 nTPM
FANTOM5:102.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055060
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2424.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2424.4
Samples: 170

Max nTPM: 7402.4
Min nTPM: 1238.1
Std nTPM: 828.7
Median nTPM: 2281.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 7402.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 6540.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 4426.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4364.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 4025.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4022.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3814.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 3726.7
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3719.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3651.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3615.7
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3588.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3505.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 3467.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3462.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3461.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3441.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 3371.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3343.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3333.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3272.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 3243.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 3148.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3135.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 3132.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3131.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 3112.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3038.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 3010.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3001.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2940.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2937.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2917.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2911.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2900.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2897.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2882.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2881.4
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2871.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2867.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2848.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2815.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2794.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2783.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2779.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2779.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2752.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2733.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2712.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2708.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2708.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2708.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2704.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2701.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2686.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2633.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2627.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2624.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 2603.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2594.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2593.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2573.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2560.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2549.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2515.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2507.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2491.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2481.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2477.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2475.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2468.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2457.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2452.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2400.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2388.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2381.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2375.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2342.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2337.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2337.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2329.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2313.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2306.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2303.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2295.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2266.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2260.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2256.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2256.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2251.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2249.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2236.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2231.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2218.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2217.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2196.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2194.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2194.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2187.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 2178.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2171.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2149.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2147.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2138.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2132.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2111.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2071.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2056.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2048.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2016.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1997.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1990.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1979.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1977.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1957.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1956.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1952.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1923.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1898.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1890.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1889.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1880.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1876.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1875.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1869.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1868.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1865.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1855.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1852.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1844.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1830.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1826.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1806.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1806.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1764.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1757.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1751.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1749.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1742.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1742.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1740.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1736.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1729.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1714.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1707.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1679.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1662.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1653.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1651.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1623.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1623.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1623.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1609.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1607.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1586.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1583.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1579.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1565.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1517.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1499.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1493.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1428.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1397.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1346.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1331.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1329.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1322.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1314.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1309.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1238.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 102.4
FF:10204-103F6 68 years, female 102.4

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