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  • SUMMARY

  • TISSUE

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  • BLOOD

  • CELL LINE

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  • CRIP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:194.7 nTPM
FANTOM5:66.1 Scaled Tags Per Million
Pig:76.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042664
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 194.7
Samples: 300

Max nTPM: 348.9
Min nTPM: 61.6
Std nTPM: 47.5
Median nTPM: 190.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 348.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 341.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 319.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 311.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 304.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 300.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 300.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 299.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 295.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 294.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 292.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 290.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 288.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 287.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 287.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 285.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 277.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 275.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 274.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 274.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 272.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 271.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 268.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 264.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 264.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 263.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 262.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 261.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 259.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 258.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 257.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 257.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 255.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 255.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 255.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 255.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 254.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 251.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 248.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 247.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 246.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 246.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 245.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 244.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 243.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 243.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 242.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 242.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 240.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 240.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 239.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 237.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 237.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 236.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 235.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 234.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 234.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 233.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 232.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 232.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 231.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 230.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 230.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 230.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 229.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 228.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 228.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 227.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 226.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 225.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 225.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 224.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 223.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 223.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 223.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 222.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 220.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 220.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 220.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 220.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 220.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 218.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 218.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 217.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 217.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 216.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 216.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 215.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 215.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 215.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 213.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 213.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 212.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 212.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 211.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 211.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 210.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 210.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 209.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 209.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 209.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 209.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 208.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 208.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 208.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 207.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 207.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 206.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 206.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 206.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 205.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 205.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 204.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 202.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 202.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 201.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 201.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 200.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 200.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 200.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 200.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 199.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 199.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 198.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 198.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 198.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 198.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 198.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 198.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 197.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 197.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 196.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 195.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 195.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 195.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 194.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 194.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 194.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 193.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 193.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 192.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 192.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 192.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 191.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 191.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 191.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 191.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 191.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 190.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 190.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 190.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 189.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 189.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 189.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 189.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 188.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 188.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 188.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 187.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 187.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 186.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 186.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 186.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 186.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 186.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 185.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 185.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 185.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 185.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 185.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 185.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 184.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 184.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 183.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 183.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 183.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 182.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 182.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 182.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 182.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 182.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 181.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 181.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 181.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 181.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 180.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 180.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 179.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 179.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 179.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 178.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 178.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 178.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 177.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 176.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 176.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 176.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 175.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 175.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 175.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 174.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 174.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 174.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 174.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 173.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 173.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 173.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 172.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 172.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 171.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 169.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 169.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 169.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 168.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 167.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 167.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 167.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 167.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 167.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 166.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 166.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 166.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 165.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 165.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 163.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 163.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 163.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 162.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 161.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 160.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 159.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 158.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 157.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 157.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 157.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 156.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 156.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 156.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 156.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 155.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 155.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 154.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 153.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 152.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 152.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 152.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 152.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 151.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 151.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 150.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 149.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 149.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 147.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 146.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 146.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 146.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 146.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 146.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 145.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 145.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 145.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 145.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 141.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 140.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 139.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 138.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 137.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 136.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 136.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 136.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 135.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 134.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 133.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 133.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 132.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 131.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 130.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 129.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 129.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 126.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 123.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 119.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 119.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 117.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 115.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 103.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 101.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 95.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 95.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 93.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 89.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 85.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 61.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.1
FF:10164-103B2 76 years, female 66.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Pig sample Sample description nTPM
Caudate
nTPM: 76.2
Samples: 4

Max nTPM: 95.8
Min nTPM: 57.1
Sample A Female 57.1
Sample B Female 78.2
Sample C Male 95.8
Sample D Male 73.6

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