MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.6 nTPM
HPA Brain:87.4 nTPM
GTEx:95.6 nTPM
FANTOM5:200.5 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:2.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.9
2411 Female, age 72, unknown 88.3
1870 Female, age 42, unknown 82.8
1827 Male, age 72, unknown 75.7
2219 Male, age 76, both hemispheres 74.2
1830 Male, age 51, unknown 71.0
1833 Male, age 53, unknown 70.5
2666 Male, age 74, left hemisphere 67.6
2828 Female, age 72, unknown 61.4
2019 Male, age 18, unknown 48.9
2586 Male, age 75, left hemisphere 38.7
Dorsal raphe nucleus
nTPM: 68.1
2750 Male, age 76, both hemispheres 84.1
2298 Female, age 72, unknown 70.7
2047 Male, age 72, unknown 66.8
1828 Male, age 53, unknown 65.8
2016 Female, age 72, unknown 52.7
Inferior colliculus
nTPM: 59.2
2097 Female, age 72, unknown 67.6
2849 Male, age 72, unknown 62.0
1848 Female, age 42, unknown 57.6
1890 Male, age 53, unknown 49.4
Median raphe nucleus
nTPM: 87.4
2220 Male, age 76, midline 87.4
Periaquaductal grey, anterior
nTPM: 82.9
1947 Male, age 18, unknown 106.6
2502 Female, age 75, unknown 73.5
1795 Male, age 51, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 54.5
1831 Male, age 72, unknown 55.6
2464 Female, age 72, unknown 55.2
2850 Male, age 76, both hemispheres 53.6
1840 Male, age 53, unknown 53.4
Periaquaductal grey, lateral
nTPM: 53.2
2053 Male, age 18, unknown 65.0
2272 Male, age 74, both hemispheres 52.2
2140 Male, age 76, both hemispheres 42.3
Pretectal area
nTPM: 64.1
1815 Male, age 53, unknown 76.3
2224 Female, age 72, unknown 74.1
2825 Male, age 18, unknown 72.1
1817 Female, age 42, unknown 70.7
1944 Female, age 72, unknown 68.1
1816 Male, age 51, unknown 67.7
2007 Male, age 72, unknown 66.6
2316 Male, age 76, right hemisphere 60.7
2407 Male, age 75, both hemispheres 57.1
2273 Male, age 74, both hemispheres 52.9
2667 Female, age 75, unknown 38.7
Red nucleus
nTPM: 66.9
2725 Female, age 75, unknown 87.5
1821 Female, age 72, unknown 77.2
1954 Female, age 42, unknown 71.8
1865 Male, age 51, unknown 71.2
2503 Female, age 72, unknown 70.5
2584 Male, age 75, left hemisphere 67.9
2823 Male, age 76, right hemisphere 64.3
1904 Male, age 53, unknown 64.1
2588 Male, age 74, left hemisphere 62.3
2227 Male, age 72, unknown 60.2
2769 Male, age 72, unknown 57.4
2785 Male, age 18, unknown 48.3
Substantia nigra
nTPM: 67.4
2241 Male, age 72, unknown 91.3
1889 Female, age 72, unknown 76.2
2590 Female, age 75, unknown 73.0
1916 Female, age 42, unknown 68.3
2583 Male, age 75, right hemisphere 68.2
2409 Female, age 72, unknown 68.1
1941 Male, age 53, unknown 67.1
1851 Male, age 51, unknown 59.7
2699 Male, age 18, unknown 54.3
2665 Male, age 74, both hemispheres 47.5
Superior colliculus
nTPM: 63.8
2668 Female, age 75, unknown 77.2
2261 Male, age 18, unknown 75.7
1895 Male, age 76, right hemisphere 72.1
2587 Male, age 74, left hemisphere 69.9
1839 Male, age 51, unknown 69.0
1796 Male, age 53, unknown 68.4
1913 Female, age 42, unknown 64.4
2087 Female, age 72, unknown 59.8
1995 Male, age 72, unknown 44.5
2664 Male, age 75, both hemispheres 37.3
Ventral tegmental area
nTPM: 66.2
2218 Male, age 76, both hemispheres 72.0
2223 Female, age 72, unknown 69.1
2410 Female, age 72, unknown 67.2
1915 Female, age 42, unknown 65.6
1942 Male, age 51, unknown 63.8
2021 Male, age 53, unknown 59.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 95.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.6
Samples: 183

Max nTPM: 222.7
Min nTPM: 23.5
Std nTPM: 33.1
Median nTPM: 91.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 222.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 206.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 198.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 180.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 177.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 171.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 161.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 154.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 150.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 146.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 145.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 200.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.5
FF:10158-103A5 76 years, female 200.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 27.7
Min nTPM: 4.9
Sample A Female 21.6
Sample B Female 13.0
Sample C Male 27.7
Sample D Male 4.9
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 23.0
Sample C Male 31.0
Sample D Male 27.9
Periaqueductal gray
nTPM: 29.2
Samples: 3

Max nTPM: 39.5
Min nTPM: 22.6
Sample B Female 22.6
Sample C Male 39.5
Sample D Male 25.5
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 1.9
Sample A Female 16.9
Sample B Female 1.9
Sample C Male 4.5
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.7
Sample C Female 3.1
Sample D Female 2.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71492760 Antisense, RP_050913_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1

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