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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:356.8 nTPM
GTEx:356.8 nTPM
FANTOM5:920.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 356.8
Samples: 105

Max nTPM: 609.2
Min nTPM: 156.4
Std nTPM: 78.7
Median nTPM:
501_1 88 years, male 609.2
142_1 61 years, female 580.4
17_1 71 years, male 541.8
413_1 59 years, female 529.8
506_1 65 years, male 519.4
35_1 74 years, female 510.5
315_1 62 years, female 508.9
119_1 70 years, female 495.3
42_1 85 years, male 462.7
313_1 79 years, female 458.4
139_1 64 years, female 450.3
18_1 88 years, male 439.7
145_1 84 years, male 438.4
295_1 61 years, female 437.8
120_1 70 years, female 433.5
288_1 66 years, female 430.5
379_1 60 years, male 429.4
153_1 70 years, female 423.5
137_1 83 years, male 420.0
237_1 82 years, male 420.0
4_1 88 years, female 416.8
173_1 67 years, male 411.9
264_1 73 years, female 409.6
376_1 75 years, female 408.0
414_1 84 years, female 405.2
316_1 62 years, male 402.1
229_1 69 years, female 400.6
404_1 82 years, female 394.7
321_1 62 years, female 394.2
2_1 77 years, female 392.5
452_1 88 years, female 391.7
6_1 73 years, female 391.2
109_1 81 years, female 387.7
126_1 63 years, male 384.7
41_1 94 years, female 383.8
265_1 87 years, male 377.3
117_1 61 years, male 375.6
324_1 76 years, male 375.6
43_1 64 years, female 374.9
89_1 63 years, male 374.8
319_1 81 years, male 373.1
377_1 82 years, female 370.9
266_1 85 years, male 363.5
350_1 84 years, female 363.2
466_1 57 years, female 360.4
394_1 75 years, female 356.5
314_1 67 years, male 355.9
375_1 74 years, female 355.6
177_1 74 years, male 355.5
406_1 79 years, male 354.7
317_1 60 years, male 346.8
99_1 64 years, male 345.7
384_1 83 years, male 345.0
499_1 55 years, female 343.3
149_1 88 years, male 342.3
243_1 75 years, male 341.8
246_1 77 years, male 341.8
396_1 62 years, male 340.1
322_1 76 years, male 338.3
115_1 83 years, male 337.5
254_1 77 years, female 337.0
348_1 84 years, male 334.7
286_1 68 years, female 332.7
32_1 67 years, male 331.0
526_1 61 years, male 330.0
491_1 89 years, female 325.7
335_1 73 years, female 325.5
405_1 91 years, male 324.5
425_1 59 years, female 322.8
386_1 76 years, male 322.7
9_1 66 years, female 315.9
307_1 66 years, female 315.0
356_1 87 years, female 314.2
320_1 89 years, female 313.8
490_1 67 years, female 313.8
468_1 89 years, male 313.5
81_1 67 years, male 312.7
318_1 68 years, male 310.7
503_1 68 years, male 308.9
351_1 91 years, male 308.8
480_1 63 years, male 298.2
218_1 71 years, female 295.4
163_1 78 years, male 292.7
415_1 77 years, female 290.9
308_1 70 years, female 287.9
352_1 62 years, male 286.4
355_1 70 years, female 284.1
292_1 71 years, male 282.4
311_1 78 years, male 281.6
517_1 88 years, male 279.3
217_1 76 years, male 278.0
172_1 72 years, female 277.8
291_1 76 years, male 277.4
347_1 72 years, male 271.4
447_1 81 years, male 271.1
349_1 83 years, male 270.2
495_1 57 years, female 269.5
162_1 79 years, female 268.5
189_1 76 years, male 260.4
353_1 82 years, female 259.4
293_1 68 years, female 257.9
518_1 75 years, female 245.5
389_1 86 years, female 215.1
251_1 78 years, male 167.5
354_1 81 years, female 156.4
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

920.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 920.0
FF:10030-101E3 24-65 years, mixed 920.0

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