MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.5 nTPM
HPA Brain:149.6 nTPM
GTEx:153.5 nTPM
FANTOM5:630.6 Scaled Tags Per Million
Pig:408.8 nTPM
Mouse:147.9 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.6
1870 Female, age 42, unknown 178.9
2828 Female, age 72, unknown 143.3
1833 Male, age 53, unknown 134.3
1830 Male, age 51, unknown 125.7
2019 Male, age 18, unknown 125.2
2219 Male, age 76, both hemispheres 116.2
2411 Female, age 72, unknown 115.1
1827 Male, age 72, unknown 107.3
2666 Male, age 74, left hemisphere 106.6
2586 Male, age 75, left hemisphere 73.0
Dorsal raphe nucleus
nTPM: 129.0
2298 Female, age 72, unknown 142.7
2750 Male, age 76, both hemispheres 139.0
1828 Male, age 53, unknown 131.8
2016 Female, age 72, unknown 127.4
2047 Male, age 72, unknown 104.1
Inferior colliculus
nTPM: 137.3
2097 Female, age 72, unknown 146.0
2849 Male, age 72, unknown 138.7
1890 Male, age 53, unknown 133.4
1848 Female, age 42, unknown 130.9
Median raphe nucleus
nTPM: 135.1
2220 Male, age 76, midline 135.1
Periaquaductal grey, anterior
nTPM: 99.0
2502 Female, age 75, unknown 106.8
1947 Male, age 18, unknown 96.2
1795 Male, age 51, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 124.3
2850 Male, age 76, both hemispheres 148.2
1831 Male, age 72, unknown 130.9
1840 Male, age 53, unknown 116.3
2464 Female, age 72, unknown 101.9
Periaquaductal grey, lateral
nTPM: 136.2
2272 Male, age 74, both hemispheres 145.5
2140 Male, age 76, both hemispheres 138.0
2053 Male, age 18, unknown 125.1
Pretectal area
nTPM: 131.5
2667 Female, age 75, unknown 163.1
2273 Male, age 74, both hemispheres 156.2
2224 Female, age 72, unknown 152.7
1817 Female, age 42, unknown 136.8
1815 Male, age 53, unknown 129.5
2407 Male, age 75, both hemispheres 126.9
2825 Male, age 18, unknown 125.0
2316 Male, age 76, right hemisphere 124.6
1944 Female, age 72, unknown 119.0
1816 Male, age 51, unknown 106.5
2007 Male, age 72, unknown 106.2
Red nucleus
nTPM: 149.6
1865 Male, age 51, unknown 181.9
2769 Male, age 72, unknown 178.4
1821 Female, age 72, unknown 168.9
2227 Male, age 72, unknown 166.6
1904 Male, age 53, unknown 162.5
2823 Male, age 76, right hemisphere 159.4
2503 Female, age 72, unknown 156.2
1954 Female, age 42, unknown 153.9
2725 Female, age 75, unknown 149.0
2785 Male, age 18, unknown 148.6
2584 Male, age 75, left hemisphere 89.6
2588 Male, age 74, left hemisphere 80.6
Substantia nigra
nTPM: 123.2
2699 Male, age 18, unknown 159.2
1916 Female, age 42, unknown 142.4
1851 Male, age 51, unknown 140.2
1889 Female, age 72, unknown 135.8
2665 Male, age 74, both hemispheres 118.1
2590 Female, age 75, unknown 114.2
1941 Male, age 53, unknown 113.2
2241 Male, age 72, unknown 112.5
2583 Male, age 75, right hemisphere 98.3
2409 Female, age 72, unknown 97.9
Superior colliculus
nTPM: 125.9
1913 Female, age 42, unknown 171.3
2587 Male, age 74, left hemisphere 152.3
1995 Male, age 72, unknown 149.9
1796 Male, age 53, unknown 126.2
1839 Male, age 51, unknown 119.9
1895 Male, age 76, right hemisphere 118.4
2087 Female, age 72, unknown 118.3
2664 Male, age 75, both hemispheres 103.9
2261 Male, age 18, unknown 103.3
2668 Female, age 75, unknown 95.4
Ventral tegmental area
nTPM: 130.2
2223 Female, age 72, unknown 153.9
2218 Male, age 76, both hemispheres 146.8
1915 Female, age 42, unknown 127.4
2410 Female, age 72, unknown 123.4
2021 Male, age 53, unknown 116.4
1942 Male, age 51, unknown 113.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 153.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.5
Samples: 183

Max nTPM: 272.3
Min nTPM: 58.4
Std nTPM: 39.3
Median nTPM: 153.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 272.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 266.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 255.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 243.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 239.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 232.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 232.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 228.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 221.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 219.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 218.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 630.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 630.6
FF:10158-103A5 76 years, female 630.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 408.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 406.9
Samples: 4

Max nTPM: 451.7
Min nTPM: 331.3
Sample A Female 449.6
Sample B Female 331.3
Sample C Male 395.0
Sample D Male 451.7
Midbrain
nTPM: 408.9
Samples: 4

Max nTPM: 614.2
Min nTPM: 307.9
Sample A Female 614.2
Sample B Female 399.6
Sample C Male 313.7
Sample D Male 307.9
Periaqueductal gray
nTPM: 358.2
Samples: 3

Max nTPM: 378.4
Min nTPM: 330.3
Sample B Female 365.9
Sample C Male 378.4
Sample D Male 330.3
Superior colliculi
nTPM: 357.0
Samples: 4

Max nTPM: 445.4
Min nTPM: 241.4
Sample A Female 445.4
Sample B Female 241.4
Sample C Male 359.3
Sample D Male 382.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 147.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.9
Samples: 4

Max nTPM: 153.5
Min nTPM: 143.0
Sample A Male 153.5
Sample B Male 147.7
Sample C Female 143.0
Sample D Female 147.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69080518 Antisense, RP_050324_02_C07, Mouse strain C57BL/6J (56 days, male) 1.8

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