MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.9 nTPM
HPA Brain:30.2 nTPM
GTEx:31.9 nTPM
FANTOM5:73.1 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:4.9 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.9
1830 Male, age 51, unknown 30.4
1833 Male, age 53, unknown 30.0
2666 Male, age 74, left hemisphere 29.7
2828 Female, age 72, unknown 28.9
1870 Female, age 42, unknown 26.7
2019 Male, age 18, unknown 26.1
2586 Male, age 75, left hemisphere 25.6
2411 Female, age 72, unknown 25.3
1827 Male, age 72, unknown 23.4
2219 Male, age 76, both hemispheres 23.3
Dorsal raphe nucleus
nTPM: 23.9
2750 Male, age 76, both hemispheres 31.2
1828 Male, age 53, unknown 24.8
2047 Male, age 72, unknown 23.5
2298 Female, age 72, unknown 20.2
2016 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 20.5
2849 Male, age 72, unknown 24.1
1848 Female, age 42, unknown 21.1
1890 Male, age 53, unknown 20.3
2097 Female, age 72, unknown 16.7
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Periaquaductal grey, anterior
nTPM: 23.0
1947 Male, age 18, unknown 26.3
1795 Male, age 51, unknown 22.4
2502 Female, age 75, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 22.3
1831 Male, age 72, unknown 24.5
2850 Male, age 76, both hemispheres 23.9
2464 Female, age 72, unknown 22.0
1840 Male, age 53, unknown 18.9
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 20.9
2053 Male, age 18, unknown 20.5
Pretectal area
nTPM: 23.6
2667 Female, age 75, unknown 29.5
2407 Male, age 75, both hemispheres 27.4
1815 Male, age 53, unknown 26.1
2007 Male, age 72, unknown 24.1
2825 Male, age 18, unknown 24.1
2316 Male, age 76, right hemisphere 23.8
1817 Female, age 42, unknown 21.5
1944 Female, age 72, unknown 21.5
2224 Female, age 72, unknown 20.6
2273 Male, age 74, both hemispheres 20.5
1816 Male, age 51, unknown 20.2
Red nucleus
nTPM: 30.2
2823 Male, age 76, right hemisphere 38.1
1904 Male, age 53, unknown 35.6
1865 Male, age 51, unknown 34.3
2584 Male, age 75, left hemisphere 31.3
2588 Male, age 74, left hemisphere 30.9
2769 Male, age 72, unknown 30.7
2227 Male, age 72, unknown 29.2
1954 Female, age 42, unknown 28.6
2725 Female, age 75, unknown 26.7
2503 Female, age 72, unknown 25.9
2785 Male, age 18, unknown 25.8
1821 Female, age 72, unknown 25.0
Substantia nigra
nTPM: 24.4
2699 Male, age 18, unknown 30.2
1851 Male, age 51, unknown 27.5
2409 Female, age 72, unknown 26.3
2590 Female, age 75, unknown 25.3
2583 Male, age 75, right hemisphere 24.5
2665 Male, age 74, both hemispheres 24.2
1941 Male, age 53, unknown 23.1
1889 Female, age 72, unknown 22.7
1916 Female, age 42, unknown 21.4
2241 Male, age 72, unknown 18.6
Superior colliculus
nTPM: 24.4
1913 Female, age 42, unknown 32.0
2664 Male, age 75, both hemispheres 29.4
1995 Male, age 72, unknown 26.9
2587 Male, age 74, left hemisphere 23.8
2087 Female, age 72, unknown 23.5
2668 Female, age 75, unknown 23.1
1839 Male, age 51, unknown 22.4
1895 Male, age 76, right hemisphere 22.0
2261 Male, age 18, unknown 21.0
1796 Male, age 53, unknown 20.5
Ventral tegmental area
nTPM: 23.0
2223 Female, age 72, unknown 30.2
2218 Male, age 76, both hemispheres 24.5
2410 Female, age 72, unknown 21.9
2021 Male, age 53, unknown 21.2
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 183

Max nTPM: 109.4
Min nTPM: 10.6
Std nTPM: 11.2
Median nTPM: 30.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 109.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 80.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 54.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 52.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 52.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 50.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 49.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 73.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.1
FF:10158-103A5 76 years, female 73.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.1
Sample C Male 6.1
Sample D Male 7.6
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.8
Sample A Female 6.0
Sample B Female 4.8
Sample C Male 5.6
Sample D Male 5.4
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 5.7
Min nTPM: 4.6
Sample B Female 4.6
Sample C Male 4.6
Sample D Male 5.7
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 4.6
Sample C Male 4.9
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.3
Sample A Male 3.3
Sample B Male 5.4
Sample C Female 4.9
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69854587 Antisense, RP_050324_04_C08, Mouse strain C57BL/6J (56 days, male) 1.8

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