MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.8 nTPM
HPA Brain:31.3 nTPM
GTEx:59.8 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:39.4 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2586 Male, age 75, left hemisphere 36.4
2019 Male, age 18, unknown 31.4
2828 Female, age 72, unknown 31.3
1827 Male, age 72, unknown 28.6
1870 Female, age 42, unknown 27.7
2411 Female, age 72, unknown 27.4
2666 Male, age 74, left hemisphere 27.2
1833 Male, age 53, unknown 25.4
2219 Male, age 76, both hemispheres 24.2
1830 Male, age 51, unknown 23.7
Dorsal raphe nucleus
nTPM: 28.8
2298 Female, age 72, unknown 33.1
1828 Male, age 53, unknown 30.7
2047 Male, age 72, unknown 27.6
2750 Male, age 76, both hemispheres 26.7
2016 Female, age 72, unknown 25.9
Inferior colliculus
nTPM: 28.2
2097 Female, age 72, unknown 31.0
1890 Male, age 53, unknown 30.9
2849 Male, age 72, unknown 27.0
1848 Female, age 42, unknown 23.8
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 31.0
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 30.6
1947 Male, age 18, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 26.5
1831 Male, age 72, unknown 30.2
2850 Male, age 76, both hemispheres 27.4
1840 Male, age 53, unknown 25.8
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 27.4
2053 Male, age 18, unknown 28.4
2140 Male, age 76, both hemispheres 26.9
2272 Male, age 74, both hemispheres 26.9
Pretectal area
nTPM: 29.3
1817 Female, age 42, unknown 34.2
2007 Male, age 72, unknown 34.1
1816 Male, age 51, unknown 31.4
2667 Female, age 75, unknown 31.1
1944 Female, age 72, unknown 30.8
2273 Male, age 74, both hemispheres 29.1
1815 Male, age 53, unknown 28.8
2224 Female, age 72, unknown 26.7
2407 Male, age 75, both hemispheres 25.6
2316 Male, age 76, right hemisphere 25.5
2825 Male, age 18, unknown 25.1
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 35.2
2584 Male, age 75, left hemisphere 32.2
2769 Male, age 72, unknown 32.1
2785 Male, age 18, unknown 31.4
2588 Male, age 74, left hemisphere 30.8
1865 Male, age 51, unknown 30.7
2503 Female, age 72, unknown 30.3
1904 Male, age 53, unknown 30.0
2725 Female, age 75, unknown 29.8
2823 Male, age 76, right hemisphere 28.3
1954 Female, age 42, unknown 27.2
2227 Male, age 72, unknown 26.5
Substantia nigra
nTPM: 31.3
1916 Female, age 42, unknown 41.6
1851 Male, age 51, unknown 35.9
1889 Female, age 72, unknown 35.9
1941 Male, age 53, unknown 33.9
2699 Male, age 18, unknown 31.0
2665 Male, age 74, both hemispheres 29.2
2241 Male, age 72, unknown 27.8
2590 Female, age 75, unknown 27.8
2583 Male, age 75, right hemisphere 27.7
2409 Female, age 72, unknown 22.3
Superior colliculus
nTPM: 28.5
2664 Male, age 75, both hemispheres 33.3
2587 Male, age 74, left hemisphere 30.9
1913 Female, age 42, unknown 30.4
2668 Female, age 75, unknown 28.9
2261 Male, age 18, unknown 28.2
1895 Male, age 76, right hemisphere 27.8
1796 Male, age 53, unknown 27.1
1995 Male, age 72, unknown 26.8
2087 Female, age 72, unknown 25.9
1839 Male, age 51, unknown 25.8
Ventral tegmental area
nTPM: 30.9
1915 Female, age 42, unknown 32.2
1942 Male, age 51, unknown 32.2
2218 Male, age 76, both hemispheres 32.1
2410 Female, age 72, unknown 30.5
2223 Female, age 72, unknown 29.4
2021 Male, age 53, unknown 28.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.8
Samples: 183

Max nTPM: 125.6
Min nTPM: 27.0
Std nTPM: 13.4
Median nTPM: 57.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 125.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 108.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 100.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 97.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 86.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 85.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 85.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 81.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 79.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 22.2
Sample A Female 27.6
Sample B Female 22.2
Sample C Male 24.7
Sample D Male 25.4
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 30.7
Min nTPM: 24.1
Sample A Female 30.7
Sample B Female 24.1
Sample C Male 30.2
Sample D Male 29.3
Periaqueductal gray
nTPM: 20.4
Samples: 3

Max nTPM: 21.6
Min nTPM: 18.9
Sample B Female 20.6
Sample C Male 21.6
Sample D Male 18.9
Superior colliculi
nTPM: 32.1
Samples: 4

Max nTPM: 32.7
Min nTPM: 31.8
Sample A Female 31.9
Sample B Female 32.7
Sample C Male 32.0
Sample D Male 31.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 33.1
Sample A Male 52.0
Sample B Male 36.7
Sample C Female 33.1
Sample D Female 35.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74819464 Antisense, RP_060315_02_F06, Mouse strain C57BL/6J (56 days, male) 0.7
69262249 Antisense, RP_050301_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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