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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA024686
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA024744
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 41.0
Samples: 105
Max nTPM: 95.6
Min nTPM: 8.9
Std nTPM: 17.2
Median nTPM:
218_1
71 years, female
95.6
354_1
81 years, female
78.4
347_1
72 years, male
77.1
163_1
78 years, male
76.7
237_1
82 years, male
76.2
355_1
70 years, female
71.7
447_1
81 years, male
69.9
386_1
76 years, male
68.9
243_1
75 years, male
68.7
352_1
62 years, male
68.0
172_1
72 years, female
66.0
319_1
81 years, male
63.1
375_1
74 years, female
62.8
6_1
73 years, female
62.5
353_1
82 years, female
62.5
379_1
60 years, male
62.2
318_1
68 years, male
61.7
405_1
91 years, male
60.9
350_1
84 years, female
60.8
348_1
84 years, male
57.0
356_1
87 years, female
56.2
384_1
83 years, male
55.8
377_1
82 years, female
54.4
177_1
74 years, male
54.3
316_1
62 years, male
53.5
425_1
59 years, female
52.8
35_1
74 years, female
50.2
389_1
86 years, female
49.8
291_1
76 years, male
49.6
320_1
89 years, female
49.6
349_1
83 years, male
48.4
351_1
91 years, male
48.4
251_1
78 years, male
48.2
173_1
67 years, male
47.4
42_1
85 years, male
46.6
286_1
68 years, female
46.2
311_1
78 years, male
45.6
322_1
76 years, male
45.6
517_1
88 years, male
44.9
503_1
68 years, male
44.4
229_1
69 years, female
43.8
376_1
75 years, female
43.2
394_1
75 years, female
43.2
526_1
61 years, male
42.6
246_1
77 years, male
41.9
265_1
87 years, male
41.7
264_1
73 years, female
41.2
292_1
71 years, male
40.4
307_1
66 years, female
40.0
506_1
65 years, male
40.0
99_1
64 years, male
39.9
9_1
66 years, female
39.0
117_1
61 years, male
39.0
115_1
83 years, male
37.0
480_1
63 years, male
36.8
313_1
79 years, female
36.6
468_1
89 years, male
36.5
189_1
76 years, male
36.2
396_1
62 years, male
35.7
518_1
75 years, female
35.3
317_1
60 years, male
35.2
217_1
76 years, male
35.1
254_1
77 years, female
35.1
406_1
79 years, male
34.1
321_1
62 years, female
33.7
452_1
88 years, female
33.4
490_1
67 years, female
33.3
335_1
73 years, female
31.6
293_1
68 years, female
31.1
324_1
76 years, male
30.6
153_1
70 years, female
29.9
2_1
77 years, female
29.4
43_1
64 years, female
29.4
145_1
84 years, male
29.4
32_1
67 years, male
29.0
404_1
82 years, female
29.0
17_1
71 years, male
28.7
41_1
94 years, female
28.4
499_1
55 years, female
27.7
81_1
67 years, male
27.4
120_1
70 years, female
27.0
126_1
63 years, male
26.3
18_1
88 years, male
26.2
495_1
57 years, female
26.2
466_1
57 years, female
25.8
314_1
67 years, male
25.1
288_1
66 years, female
25.0
137_1
83 years, male
24.9
142_1
61 years, female
24.6
415_1
77 years, female
24.6
4_1
88 years, female
23.1
295_1
61 years, female
23.1
315_1
62 years, female
22.4
139_1
64 years, female
21.4
119_1
70 years, female
21.3
266_1
85 years, male
21.0
149_1
88 years, male
19.9
109_1
81 years, female
18.8
414_1
84 years, female
18.4
162_1
79 years, female
17.9
491_1
89 years, female
17.6
308_1
70 years, female
15.3
89_1
63 years, male
14.3
501_1
88 years, male
10.9
413_1
59 years, female
8.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
