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  • NDUFB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:573.6 nTPM
HPA Brain:89.3 nTPM
GTEx:573.6 nTPM
FANTOM5:83.7 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:126.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.3
Sample id Sample description nTPM
Amygdala
nTPM: 89.3
2814 Male, age 76, right hemisphere 120.3
2695 Female, age 67, right hemisphere 93.0
2514 Male, age 75, right hemisphere 85.7
1987 Female, age 91, left hemisphere 79.6
2517 Female, age 94, left hemisphere 68.0
Basal amygdala
nTPM: 72.9
2609 Male, age 75, right hemisphere 87.9
2110 Male, age 80, left hemisphere 84.8
1955 Male, age 76, both hemispheres 83.2
2685 Female, age 94, left hemisphere 69.7
2243 Female, age 91, right hemisphere 63.0
2827 Female, age 67, right hemisphere 48.5
Central amygdala
nTPM: 70.8
1905 Male, age 76, both hemispheres 99.2
2826 Female, age 94, left hemisphere 71.3
2515 Male, age 75, right hemisphere 63.5
2701 Female, age 91, right hemisphere 60.5
2239 Male, age 80, left hemisphere 59.4
Corticomedial amygdala
nTPM: 71.7
2829 Male, age 80, left hemisphere 90.0
2240 Male, age 76, both hemispheres 80.6
2428 Male, age 75, right hemisphere 77.3
2429 Female, age 94, left hemisphere 77.3
2242 Female, age 91, right hemisphere 71.7
2535 Female, age 67, right hemisphere 33.2
Lateral amygdala
nTPM: 62.3
1883 Male, age 76, both hemispheres 102.6
2534 Female, age 94, left hemisphere 70.1
2516 Male, age 75, right hemisphere 68.3
2256 Male, age 80, left hemisphere 46.7
2830 Female, age 67, right hemisphere 45.8
2255 Female, age 91, right hemisphere 40.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

573.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 573.6
Samples: 181

Max nTPM: 2641.2
Min nTPM: 260.0
Std nTPM: 261.4
Median nTPM: 518.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2641.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1708.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1532.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1330.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1233.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1177.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1085.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 992.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 983.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 964.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 919.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 918.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 892.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 863.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 838.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 789.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 778.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 768.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 760.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 758.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 754.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 748.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 744.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 737.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 732.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 725.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 721.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 719.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 718.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 717.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 716.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 715.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 712.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 707.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 698.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 693.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 678.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 676.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 676.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 673.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 665.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 659.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 658.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 657.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 652.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 649.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 644.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 644.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 643.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 635.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 633.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 632.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 631.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 630.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 629.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 626.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 626.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 622.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 622.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 620.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 607.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 605.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 602.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 594.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 594.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 590.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 590.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 577.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 572.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 572.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 569.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 568.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 562.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 561.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 559.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 556.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 555.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 551.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 546.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 543.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 539.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 537.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 535.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 527.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 526.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 525.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 524.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 524.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 520.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 518.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 518.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 517.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 515.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 511.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 511.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 507.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 506.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 505.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 505.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 503.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 502.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 501.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 498.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 494.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 492.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 492.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 492.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 491.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 488.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 479.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 477.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 476.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 471.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 467.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 460.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 458.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 454.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 453.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 450.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 450.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 450.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 449.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 446.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 443.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 439.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 436.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 433.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 431.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 428.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 428.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 428.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 427.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 426.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 422.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 420.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 420.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 419.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 417.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 415.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 409.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 405.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 404.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 403.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 401.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 399.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 398.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 395.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 395.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 394.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 393.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 392.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 390.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 389.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 388.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 380.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 380.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 378.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 376.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 372.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 372.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 369.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 367.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 367.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 367.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 365.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 362.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 360.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 355.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 354.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 347.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 345.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 343.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 337.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 332.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 317.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 308.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 298.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 295.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 284.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 280.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 260.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 83.7
FF:10151-102I7 76 years, female 83.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.6
Pig sample Sample description nTPM
Amygdala
nTPM: 44.6
Samples: 4

Max nTPM: 52.5
Min nTPM: 33.1
Sample A Female 52.2
Sample B Female 52.5
Sample C Male 40.7
Sample D Male 33.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 126.9
Samples: 4

Max nTPM: 141.8
Min nTPM: 114.4
Sample A Male 114.4
Sample B Male 128.7
Sample C Female 141.8
Sample D Female 122.7

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