HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:72.5 nTPM
GTEx:6.8 nTPM
FANTOM5:137.8 Scaled Tags Per Million
Pig:146.0 nTPM
Mouse:65.4 nTPM
Allen mouse:8.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 72.5
Sample id Sample description nTPM
Hippocampus
nTPM: 53.0
1898 Male, age 80, left hemisphere 87.1
1855 Male, age 76, left hemisphere 62.5
2621 Female, age 67, right hemisphere 58.9
2148 Female, age 91, left hemisphere 47.6
1911 Female, age 85, right hemisphere 33.5
2529 Female, age 94, left hemisphere 28.2
Dentate gyrus
nTPM: 54.4
1927 Female, age 91, both hemispheres 83.2
2010 Male, age 76, both hemispheres 70.9
2530 Female, age 94, left hemisphere 53.5
2246 Female, age 85, both hemispheres 47.2
2528 Male, age 74, both hemispheres 43.0
2531 Female, age 67, both hemispheres 28.6
Entorhinal gyrus
nTPM: 57.1
2613 Female, age 94, left hemisphere 79.1
1938 Female, age 85, left hemisphere 68.5
2764 Male, age 80, right hemisphere 67.3
1787 Male, age 76, left hemisphere 51.5
2686 Male, age 75, right hemisphere 46.9
2117 Female, age 91, right hemisphere 29.2
Hippocampus, CA1
nTPM: 51.4
2749 Male, age 80, left hemisphere 79.1
1873 Female, age 85, both hemispheres 72.7
2527 Male, age 74, both hemispheres 44.5
2082 Female, age 91, right hemisphere 33.2
2045 Male, age 76, both hemispheres 27.3
Hippocampus, CA2
nTPM: 60.1
1892 Male, age 76, both hemispheres 100.7
1963 Male, age 80, left hemisphere 100.5
2437 Female, age 94, left hemisphere 47.9
2249 Male, age 74, both hemispheres 40.6
2113 Female, age 91, right hemisphere 35.6
1940 Female, age 85, left hemisphere 35.3
Hippocampus, CA3
nTPM: 44.7
1867 Male, age 76, both hemispheres 58.5
2137 Male, age 80, left hemisphere 58.0
2861 Female, age 67, both hemispheres 44.6
2436 Male, age 74, both hemispheres 41.1
1891 Female, age 85, both hemispheres 37.6
2620 Female, age 94, left hemisphere 28.7
Parahippocampal cortex
nTPM: 55.7
1850 Male, age 80, both hemispheres 78.1
2693 Female, age 94, both hemispheres 70.3
1990 Female, age 91, right hemisphere 59.6
2245 Female, age 91, both hemispheres 55.8
1933 Female, age 85, both hemispheres 54.2
2532 Female, age 72, left hemisphere 53.3
2250 Female, age 67, right hemisphere 53.1
2622 Female, age 67, right hemisphere 46.5
2018 Male, age 76, both hemispheres 46.2
2692 Male, age 74, both hemispheres 40.3
Perirhinal gyrus
nTPM: 72.5
1847 Female, age 91, left hemisphere 83.7
1794 Male, age 80, right hemisphere 78.2
2521 Female, age 94, right hemisphere 69.7
1841 Female, age 85, right hemisphere 68.3
2848 Male, age 76, right hemisphere 62.4
Subiculum
nTPM: 38.8
1977 Female, age 85, both hemispheres 50.0
1901 Male, age 80, both hemispheres 47.9
2438 Female, age 94, left hemisphere 42.2
2619 Male, age 74, both hemispheres 38.4
2042 Male, age 76, both hemispheres 30.0
2729 Female, age 91, right hemisphere 24.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.8
Samples: 255

Max nTPM: 36.4
Min nTPM: 0.0
Std nTPM: 5.1
Median nTPM: 5.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 36.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 30.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 28.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 27.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 25.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 22.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 20.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 19.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 18.6
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 17.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 17.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 137.8
FF:10169-103B7 60 years, female 171.3
FF:10153-102I9 76 years, female 104.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 146.0
Pig sample Sample description nTPM
Subiculum
nTPM: 110.4
Samples: 4

Max nTPM: 139.4
Min nTPM: 89.5
Sample A Female 139.4
Sample B Female 101.1
Sample C Male 111.5
Sample D Male 89.5
Dorsal hippocampus
nTPM: 146.0
Samples: 4

Max nTPM: 176.6
Min nTPM: 94.2
Sample A Female 176.6
Sample B Female 169.2
Sample C Male 144.0
Sample D Male 94.2
Entorhinal cortex
nTPM: 112.1
Samples: 4

Max nTPM: 125.0
Min nTPM: 92.4
Sample A Female 111.2
Sample B Female 92.4
Sample C Male 125.0
Sample D Male 119.6
Ventral hippocampus
nTPM: 123.7
Samples: 4

Max nTPM: 155.3
Min nTPM: 77.2
Sample A Female 152.6
Sample B Female 77.2
Sample C Male 109.8
Sample D Male 155.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 65.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.4
Samples: 4

Max nTPM: 79.0
Min nTPM: 59.5
Sample A Male 61.8
Sample B Male 61.2
Sample C Female 59.5
Sample D Female 79.0
Hippocampal formation
nTPM: 64.9
Samples: 4

Max nTPM: 74.7
Min nTPM: 53.1
Sample A Male 58.5
Sample B Male 74.7
Sample C Female 73.2
Sample D Female 53.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
73992920 Antisense, RP_051214_01_F12, Mouse strain C57BL/6J (56 days, male) 9.9
70203688 Antisense, RP_050519_02_B03, Mouse strain C57BL/6J (56 days, male) 7.7

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