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  • ACTG1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:758.9 nTPM
HPA Brain:684.2 nTPM
GTEx:758.9 nTPM
FANTOM5:1177.3 Scaled Tags Per Million
Pig:907.5 nTPM
Mouse:1463.8 nTPM
Allen mouse:27.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

684.2
Sample id Sample description nTPM
Amygdala
nTPM: 678.4
1987 Female, age 91, left hemisphere 786.3
2814 Male, age 76, right hemisphere 775.1
2695 Female, age 67, right hemisphere 656.8
2514 Male, age 75, right hemisphere 645.9
2517 Female, age 94, left hemisphere 528.0
Basal amygdala
nTPM: 601.0
2243 Female, age 91, right hemisphere 753.2
2110 Male, age 80, left hemisphere 680.3
2609 Male, age 75, right hemisphere 658.5
1955 Male, age 76, both hemispheres 641.9
2685 Female, age 94, left hemisphere 481.0
2827 Female, age 67, right hemisphere 391.4
Central amygdala
nTPM: 684.2
2515 Male, age 75, right hemisphere 781.7
2239 Male, age 80, left hemisphere 753.3
1905 Male, age 76, both hemispheres 698.5
2826 Female, age 94, left hemisphere 619.1
2701 Female, age 91, right hemisphere 568.2
Corticomedial amygdala
nTPM: 625.8
2242 Female, age 91, right hemisphere 781.0
2428 Male, age 75, right hemisphere 672.4
2829 Male, age 80, left hemisphere 652.2
2240 Male, age 76, both hemispheres 598.4
2429 Female, age 94, left hemisphere 540.9
2535 Female, age 67, right hemisphere 510.0
Lateral amygdala
nTPM: 620.6
2534 Female, age 94, left hemisphere 762.3
1883 Male, age 76, both hemispheres 666.6
2516 Male, age 75, right hemisphere 639.1
2256 Male, age 80, left hemisphere 615.3
2255 Female, age 91, right hemisphere 610.8
2830 Female, age 67, right hemisphere 429.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

758.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 758.9
Samples: 181

Max nTPM: 1872.2
Min nTPM: 362.2
Std nTPM: 207.5
Median nTPM: 736.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1872.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1465.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1417.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1338.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1313.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1302.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1174.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1136.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1118.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1101.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1062.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1056.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1052.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1048.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1046.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1040.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1025.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1024.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1008.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1005.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 986.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 982.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 977.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 973.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 951.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 944.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 915.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 911.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 910.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 909.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 909.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 906.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 904.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 903.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 899.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 869.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 867.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 867.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 867.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 857.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 855.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 852.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 849.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 844.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 843.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 843.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 840.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 835.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 830.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 828.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 827.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 821.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 820.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 814.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 814.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 803.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 803.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 798.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 798.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 797.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 796.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 791.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 790.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 789.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 788.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 785.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 784.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 782.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 780.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 777.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 777.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 775.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 773.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 769.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 768.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 767.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 761.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 760.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 758.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 754.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 753.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 751.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 750.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 747.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 747.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 747.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 747.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 744.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 743.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 736.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 736.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 736.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 735.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 735.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 729.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 725.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 724.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 723.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 723.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 721.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 720.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 719.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 716.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 715.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 713.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 713.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 711.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 708.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 705.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 704.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 699.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 697.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 694.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 692.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 684.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 684.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 680.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 680.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 675.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 674.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 673.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 669.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 669.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 665.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 663.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 660.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 658.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 656.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 654.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 650.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 650.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 646.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 645.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 644.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 637.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 634.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 625.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 625.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 622.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 620.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 618.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 617.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 616.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 611.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 609.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 601.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 599.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 598.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 595.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 588.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 588.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 587.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 583.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 582.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 579.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 572.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 571.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 557.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 549.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 534.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 532.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 530.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 529.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 524.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 509.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 508.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 504.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 492.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 489.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 486.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 486.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 479.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 469.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 452.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 443.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 440.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 436.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 421.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 410.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 381.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 362.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1177.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1177.3
FF:10151-102I7 76 years, female 1177.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

907.5
Pig sample Sample description nTPM
Amygdala
nTPM: 907.5
Samples: 4

Max nTPM: 1246.1
Min nTPM: 780.5
Sample A Female 1246.1
Sample B Female 780.5
Sample C Male 802.7
Sample D Male 800.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1463.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 1463.8
Samples: 4

Max nTPM: 1558.7
Min nTPM: 1425.2
Sample A Male 1558.7
Sample B Male 1425.2
Sample C Female 1430.0
Sample D Female 1441.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.5
67792203 Antisense, RP_040920_01_D11, Mouse strain C57BL/6J (56 days, male) 27.5

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