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  • ACTG1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:273.0 nTPM
GTEx:273.0 nTPM
FANTOM5:2429.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 273.0
Samples: 105

Max nTPM: 747.6
Min nTPM: 107.4
Std nTPM: 138.0
Median nTPM:
352_1 62 years, male 747.6
354_1 81 years, female 740.5
218_1 71 years, female 668.2
353_1 82 years, female 645.1
351_1 91 years, male 623.0
452_1 88 years, female 599.3
295_1 61 years, female 590.8
356_1 87 years, female 498.4
319_1 81 years, male 490.5
350_1 84 years, female 477.3
163_1 78 years, male 474.4
349_1 83 years, male 473.8
6_1 73 years, female 420.9
386_1 76 years, male 412.2
355_1 70 years, female 400.3
506_1 65 years, male 392.0
321_1 62 years, female 391.6
17_1 71 years, male 377.2
173_1 67 years, male 365.2
320_1 89 years, female 347.5
4_1 88 years, female 346.2
308_1 70 years, female 344.7
322_1 76 years, male 339.6
447_1 81 years, male 335.4
379_1 60 years, male 333.1
137_1 83 years, male 331.7
243_1 75 years, male 331.2
172_1 72 years, female 329.0
377_1 82 years, female 317.8
384_1 83 years, male 313.9
394_1 75 years, female 303.8
2_1 77 years, female 299.4
120_1 70 years, female 294.8
145_1 84 years, male 290.1
503_1 68 years, male 289.7
316_1 62 years, male 288.1
318_1 68 years, male 284.2
286_1 68 years, female 283.7
335_1 73 years, female 273.2
292_1 71 years, male 262.0
404_1 82 years, female 261.5
376_1 75 years, female 255.3
177_1 74 years, male 252.5
490_1 67 years, female 250.2
291_1 76 years, male 248.7
317_1 60 years, male 244.5
293_1 68 years, female 244.2
251_1 78 years, male 242.6
139_1 64 years, female 239.1
491_1 89 years, female 235.7
264_1 73 years, female 234.4
142_1 61 years, female 234.1
348_1 84 years, male 233.6
307_1 66 years, female 230.3
237_1 82 years, male 229.1
406_1 79 years, male 221.7
162_1 79 years, female 220.1
43_1 64 years, female 218.4
389_1 86 years, female 214.5
518_1 75 years, female 214.4
315_1 62 years, female 212.7
42_1 85 years, male 211.7
425_1 59 years, female 211.1
115_1 83 years, male 209.5
375_1 74 years, female 208.8
396_1 62 years, male 205.8
501_1 88 years, male 205.2
189_1 76 years, male 201.5
41_1 94 years, female 201.2
99_1 64 years, male 199.1
18_1 88 years, male 197.4
89_1 63 years, male 197.3
153_1 70 years, female 194.8
288_1 66 years, female 192.4
517_1 88 years, male 191.5
109_1 81 years, female 190.2
480_1 63 years, male 186.4
35_1 74 years, female 184.8
314_1 67 years, male 183.1
347_1 72 years, male 181.6
313_1 79 years, female 179.9
119_1 70 years, female 178.4
126_1 63 years, male 175.2
9_1 66 years, female 174.5
117_1 61 years, male 174.3
311_1 78 years, male 170.8
526_1 61 years, male 166.3
254_1 77 years, female 160.6
217_1 76 years, male 160.1
405_1 91 years, male 152.1
81_1 67 years, male 151.3
495_1 57 years, female 147.8
468_1 89 years, male 147.7
266_1 85 years, male 143.2
265_1 87 years, male 141.3
32_1 67 years, male 139.5
149_1 88 years, male 134.0
229_1 69 years, female 134.0
466_1 57 years, female 124.4
413_1 59 years, female 123.0
246_1 77 years, male 121.9
415_1 77 years, female 116.6
324_1 76 years, male 112.1
499_1 55 years, female 110.6
414_1 84 years, female 107.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2429.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2429.9
FF:10030-101E3 24-65 years, mixed 2429.9

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