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  • UQCR10
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:186.1 nTPM
HPA Brain:73.4 nTPM
GTEx:186.1 nTPM
FANTOM5:167.9 Scaled Tags Per Million
Pig:152.3 nTPM
Mouse:519.9 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.4
Sample id Sample description nTPM
Amygdala
nTPM: 73.4
2814 Male, age 76, right hemisphere 88.6
2514 Male, age 75, right hemisphere 78.0
2695 Female, age 67, right hemisphere 73.6
1987 Female, age 91, left hemisphere 67.3
2517 Female, age 94, left hemisphere 59.4
Basal amygdala
nTPM: 57.9
2609 Male, age 75, right hemisphere 77.2
1955 Male, age 76, both hemispheres 68.1
2243 Female, age 91, right hemisphere 64.3
2110 Male, age 80, left hemisphere 53.6
2685 Female, age 94, left hemisphere 49.0
2827 Female, age 67, right hemisphere 35.4
Central amygdala
nTPM: 63.4
1905 Male, age 76, both hemispheres 83.1
2515 Male, age 75, right hemisphere 67.0
2826 Female, age 94, left hemisphere 58.3
2239 Male, age 80, left hemisphere 54.3
2701 Female, age 91, right hemisphere 54.0
Corticomedial amygdala
nTPM: 61.5
2428 Male, age 75, right hemisphere 79.9
2240 Male, age 76, both hemispheres 67.8
2429 Female, age 94, left hemisphere 63.6
2829 Male, age 80, left hemisphere 60.0
2242 Female, age 91, right hemisphere 57.1
2535 Female, age 67, right hemisphere 40.8
Lateral amygdala
nTPM: 55.8
1883 Male, age 76, both hemispheres 73.8
2516 Male, age 75, right hemisphere 72.6
2534 Female, age 94, left hemisphere 61.9
2255 Female, age 91, right hemisphere 46.6
2256 Male, age 80, left hemisphere 43.6
2830 Female, age 67, right hemisphere 36.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 186.1
Samples: 181

Max nTPM: 586.2
Min nTPM: 94.6
Std nTPM: 62.2
Median nTPM: 174.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 586.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 439.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 420.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 381.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 322.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 319.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 311.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 285.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 284.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 284.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 279.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 273.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 273.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 272.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 270.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 270.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 264.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 260.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 258.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 255.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 250.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 250.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 248.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 247.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 243.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 242.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 231.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 228.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 226.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 223.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 222.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 221.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 217.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 217.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 216.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 216.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 214.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 214.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 213.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 213.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 210.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 210.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 209.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 207.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 205.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 203.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 202.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 199.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 199.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 198.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 198.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 198.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 197.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 197.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 195.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 194.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 193.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 193.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 192.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 191.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 191.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 190.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 189.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 188.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 187.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 186.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 186.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 184.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 183.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 183.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 182.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 182.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 181.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 180.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 180.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 178.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 177.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 177.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 176.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 175.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 174.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 174.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 172.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 171.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 171.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 170.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 170.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 170.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 168.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 168.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 167.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 167.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 167.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 167.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 166.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 165.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 165.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 165.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 164.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 164.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 163.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 162.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 161.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 160.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 160.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 160.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 160.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 158.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 157.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 157.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 155.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 155.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 154.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 153.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 151.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 151.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 148.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 148.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 146.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 144.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 143.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 140.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 140.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 139.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 137.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 137.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 136.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 134.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 133.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 129.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 128.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 127.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 127.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 126.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 126.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 125.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 124.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 121.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 119.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 119.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 119.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 116.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 114.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 113.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 110.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 108.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 108.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 167.9
FF:10151-102I7 76 years, female 167.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.3
Pig sample Sample description nTPM
Amygdala
nTPM: 152.3
Samples: 4

Max nTPM: 204.1
Min nTPM: 113.3
Sample A Female 204.1
Sample B Female 164.9
Sample C Male 126.9
Sample D Male 113.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

519.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 519.9
Samples: 4

Max nTPM: 574.7
Min nTPM: 483.2
Sample A Male 483.2
Sample B Male 522.6
Sample C Female 574.7
Sample D Female 498.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71763957 Antisense, RP_050921_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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