MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:35.3 nTPM
GTEx:14.7 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:8.2 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2586 Male, age 75, left hemisphere 31.4
2019 Male, age 18, unknown 25.9
2828 Female, age 72, unknown 25.8
1833 Male, age 53, unknown 23.0
1827 Male, age 72, unknown 22.2
1830 Male, age 51, unknown 21.4
1870 Female, age 42, unknown 21.2
2411 Female, age 72, unknown 20.9
2666 Male, age 74, left hemisphere 20.9
2219 Male, age 76, both hemispheres 18.8
Dorsal raphe nucleus
nTPM: 28.9
2016 Female, age 72, unknown 36.1
2298 Female, age 72, unknown 35.3
1828 Male, age 53, unknown 29.1
2047 Male, age 72, unknown 22.7
2750 Male, age 76, both hemispheres 21.2
Inferior colliculus
nTPM: 21.4
2849 Male, age 72, unknown 24.2
1890 Male, age 53, unknown 21.4
1848 Female, age 42, unknown 20.1
2097 Female, age 72, unknown 19.9
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Periaquaductal grey, anterior
nTPM: 27.0
2502 Female, age 75, unknown 30.2
1795 Male, age 51, unknown 29.8
1947 Male, age 18, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 32.0
2850 Male, age 76, both hemispheres 44.3
1840 Male, age 53, unknown 31.7
1831 Male, age 72, unknown 26.9
2464 Female, age 72, unknown 25.2
Periaquaductal grey, lateral
nTPM: 35.3
2272 Male, age 74, both hemispheres 40.8
2140 Male, age 76, both hemispheres 37.2
2053 Male, age 18, unknown 27.9
Pretectal area
nTPM: 25.0
2273 Male, age 74, both hemispheres 40.7
2407 Male, age 75, both hemispheres 30.8
2224 Female, age 72, unknown 26.4
2667 Female, age 75, unknown 25.8
2825 Male, age 18, unknown 25.5
1815 Male, age 53, unknown 23.5
2007 Male, age 72, unknown 21.8
2316 Male, age 76, right hemisphere 21.7
1816 Male, age 51, unknown 20.3
1817 Female, age 42, unknown 19.6
1944 Female, age 72, unknown 18.4
Red nucleus
nTPM: 25.5
1865 Male, age 51, unknown 27.9
2227 Male, age 72, unknown 27.6
2769 Male, age 72, unknown 27.1
1904 Male, age 53, unknown 26.6
2588 Male, age 74, left hemisphere 26.6
2584 Male, age 75, left hemisphere 25.8
2823 Male, age 76, right hemisphere 25.8
2503 Female, age 72, unknown 25.4
2785 Male, age 18, unknown 24.5
1954 Female, age 42, unknown 24.4
1821 Female, age 72, unknown 23.6
2725 Female, age 75, unknown 20.6
Substantia nigra
nTPM: 22.0
2699 Male, age 18, unknown 30.3
2665 Male, age 74, both hemispheres 24.2
1851 Male, age 51, unknown 23.3
2590 Female, age 75, unknown 23.1
2583 Male, age 75, right hemisphere 22.6
2409 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 19.9
1916 Female, age 42, unknown 19.8
2241 Male, age 72, unknown 18.8
1889 Female, age 72, unknown 17.5
Superior colliculus
nTPM: 26.3
1995 Male, age 72, unknown 38.0
2664 Male, age 75, both hemispheres 36.6
1913 Female, age 42, unknown 27.6
2261 Male, age 18, unknown 25.7
2668 Female, age 75, unknown 25.0
1839 Male, age 51, unknown 24.1
2587 Male, age 74, left hemisphere 24.1
1796 Male, age 53, unknown 21.8
2087 Female, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 19.1
Ventral tegmental area
nTPM: 22.0
2021 Male, age 53, unknown 26.6
2223 Female, age 72, unknown 24.1
1942 Male, age 51, unknown 22.8
2410 Female, age 72, unknown 21.2
1915 Female, age 42, unknown 19.8
2218 Male, age 76, both hemispheres 17.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 183

Max nTPM: 53.8
Min nTPM: 2.1
Std nTPM: 6.7
Median nTPM: 13.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 53.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 46.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 39.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 33.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 25.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 24.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 23.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.7
Sample A Female 3.9
Sample B Female 3.8
Sample C Male 2.7
Sample D Male 4.3
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.0
Sample A Female 4.8
Sample B Female 3.8
Sample C Male 2.0
Sample D Male 3.2
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 14.3
Min nTPM: 9.7
Sample B Female 9.7
Sample C Male 14.3
Sample D Male 14.3
Superior colliculi
nTPM: 3.5
Samples: 4

Max nTPM: 6.9
Min nTPM: 2.0
Sample A Female 2.7
Sample B Female 6.9
Sample C Male 2.0
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.7
Sample A Male 8.8
Sample B Male 7.2
Sample C Female 6.7
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69170162 Antisense, RP_050321_04_G02, Mouse strain C57BL/6J (56 days, male) 0.3
71212009 Antisense, RP_050816_02_F01, Mouse strain C57BL/6J (56 days, male) 0.0

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