MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.5 nTPM
HPA Brain:47.8 nTPM
GTEx:31.5 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:22.5 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
2586 Male, age 75, left hemisphere 68.8
2666 Male, age 74, left hemisphere 59.6
2828 Female, age 72, unknown 44.0
2019 Male, age 18, unknown 37.7
1833 Male, age 53, unknown 34.8
1827 Male, age 72, unknown 33.8
1830 Male, age 51, unknown 33.7
2411 Female, age 72, unknown 33.0
1870 Female, age 42, unknown 32.0
2219 Male, age 76, both hemispheres 31.0
Dorsal raphe nucleus
nTPM: 47.8
2047 Male, age 72, unknown 55.1
2298 Female, age 72, unknown 49.5
2016 Female, age 72, unknown 45.7
2750 Male, age 76, both hemispheres 45.1
1828 Male, age 53, unknown 43.9
Inferior colliculus
nTPM: 34.6
1890 Male, age 53, unknown 36.7
2849 Male, age 72, unknown 34.9
1848 Female, age 42, unknown 34.8
2097 Female, age 72, unknown 32.2
Median raphe nucleus
nTPM: 46.8
2220 Male, age 76, midline 46.8
Periaquaductal grey, anterior
nTPM: 43.0
1795 Male, age 51, unknown 47.9
1947 Male, age 18, unknown 42.2
2502 Female, age 75, unknown 38.9
Periaquaductal grey, dorsal
nTPM: 35.9
1840 Male, age 53, unknown 40.5
1831 Male, age 72, unknown 35.2
2850 Male, age 76, both hemispheres 35.2
2464 Female, age 72, unknown 32.6
Periaquaductal grey, lateral
nTPM: 35.9
2140 Male, age 76, both hemispheres 37.9
2272 Male, age 74, both hemispheres 36.1
2053 Male, age 18, unknown 33.7
Pretectal area
nTPM: 35.6
1817 Female, age 42, unknown 43.1
2007 Male, age 72, unknown 41.0
2825 Male, age 18, unknown 39.3
1815 Male, age 53, unknown 36.2
2407 Male, age 75, both hemispheres 34.9
1816 Male, age 51, unknown 34.0
1944 Female, age 72, unknown 34.0
2273 Male, age 74, both hemispheres 32.8
2316 Male, age 76, right hemisphere 32.4
2224 Female, age 72, unknown 32.2
2667 Female, age 75, unknown 31.8
Red nucleus
nTPM: 37.8
2584 Male, age 75, left hemisphere 50.8
2725 Female, age 75, unknown 39.0
2227 Male, age 72, unknown 38.6
2785 Male, age 18, unknown 38.0
2588 Male, age 74, left hemisphere 37.9
2769 Male, age 72, unknown 37.6
2823 Male, age 76, right hemisphere 37.2
2503 Female, age 72, unknown 36.7
1954 Female, age 42, unknown 36.2
1865 Male, age 51, unknown 35.6
1904 Male, age 53, unknown 33.5
1821 Female, age 72, unknown 32.7
Substantia nigra
nTPM: 43.5
2665 Male, age 74, both hemispheres 52.1
2583 Male, age 75, right hemisphere 51.0
1916 Female, age 42, unknown 49.8
1851 Male, age 51, unknown 47.3
2699 Male, age 18, unknown 45.0
1941 Male, age 53, unknown 44.1
2590 Female, age 75, unknown 41.1
1889 Female, age 72, unknown 38.1
2241 Male, age 72, unknown 35.4
2409 Female, age 72, unknown 31.1
Superior colliculus
nTPM: 35.2
2664 Male, age 75, both hemispheres 46.1
2668 Female, age 75, unknown 42.8
1995 Male, age 72, unknown 36.1
2087 Female, age 72, unknown 35.4
1796 Male, age 53, unknown 34.9
1913 Female, age 42, unknown 34.3
2261 Male, age 18, unknown 33.3
1839 Male, age 51, unknown 33.2
2587 Male, age 74, left hemisphere 32.4
1895 Male, age 76, right hemisphere 23.4
Ventral tegmental area
nTPM: 44.9
2021 Male, age 53, unknown 49.0
1942 Male, age 51, unknown 48.8
1915 Female, age 42, unknown 45.7
2223 Female, age 72, unknown 43.9
2410 Female, age 72, unknown 41.7
2218 Male, age 76, both hemispheres 40.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.5
Samples: 183

Max nTPM: 98.4
Min nTPM: 15.5
Std nTPM: 10.3
Median nTPM: 30.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 98.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 70.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 63.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 58.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 56.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 51.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 51.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 51.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 47.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.0
Sample A Female 12.4
Sample B Female 11.0
Sample C Male 13.6
Sample D Male 11.9
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.9
Sample A Female 12.9
Sample B Female 10.9
Sample C Male 13.6
Sample D Male 12.3
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 12.3
Min nTPM: 10.3
Sample B Female 10.9
Sample C Male 12.3
Sample D Male 10.3
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.6
Sample A Female 12.1
Sample B Female 9.6
Sample C Male 12.9
Sample D Male 13.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.9
Min nTPM: 21.3
Sample A Male 24.9
Sample B Male 21.3
Sample C Female 22.0
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
2323 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 6.7
2324 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 4.8

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