MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:29.5 nTPM
GTEx:26.1 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:20.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2586 Male, age 75, left hemisphere 42.3
2828 Female, age 72, unknown 32.1
2019 Male, age 18, unknown 31.7
2666 Male, age 74, left hemisphere 30.9
2411 Female, age 72, unknown 29.5
1827 Male, age 72, unknown 29.3
1870 Female, age 42, unknown 26.5
1830 Male, age 51, unknown 25.6
1833 Male, age 53, unknown 24.5
2219 Male, age 76, both hemispheres 22.4
Dorsal raphe nucleus
nTPM: 26.1
2298 Female, age 72, unknown 27.8
1828 Male, age 53, unknown 26.7
2047 Male, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 25.1
2016 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 24.0
1890 Male, age 53, unknown 25.7
2097 Female, age 72, unknown 25.0
1848 Female, age 42, unknown 23.7
2849 Male, age 72, unknown 21.5
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Periaquaductal grey, anterior
nTPM: 29.5
1795 Male, age 51, unknown 30.6
2502 Female, age 75, unknown 29.2
1947 Male, age 18, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 25.0
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 25.8
2850 Male, age 76, both hemispheres 24.5
1840 Male, age 53, unknown 23.1
Periaquaductal grey, lateral
nTPM: 25.7
2140 Male, age 76, both hemispheres 27.2
2272 Male, age 74, both hemispheres 27.0
2053 Male, age 18, unknown 23.0
Pretectal area
nTPM: 28.3
2007 Male, age 72, unknown 33.5
2667 Female, age 75, unknown 32.2
1815 Male, age 53, unknown 30.4
1817 Female, age 42, unknown 30.2
1816 Male, age 51, unknown 29.6
1944 Female, age 72, unknown 27.5
2316 Male, age 76, right hemisphere 26.9
2273 Male, age 74, both hemispheres 26.6
2825 Male, age 18, unknown 26.5
2407 Male, age 75, both hemispheres 24.2
2224 Female, age 72, unknown 23.8
Red nucleus
nTPM: 28.8
2588 Male, age 74, left hemisphere 32.8
2785 Male, age 18, unknown 32.4
2503 Female, age 72, unknown 30.0
1904 Male, age 53, unknown 29.1
2769 Male, age 72, unknown 29.1
2584 Male, age 75, left hemisphere 28.9
2227 Male, age 72, unknown 28.4
1865 Male, age 51, unknown 27.7
1821 Female, age 72, unknown 27.3
2725 Female, age 75, unknown 27.0
1954 Female, age 42, unknown 26.6
2823 Male, age 76, right hemisphere 26.1
Substantia nigra
nTPM: 27.1
1916 Female, age 42, unknown 31.4
2583 Male, age 75, right hemisphere 31.2
2409 Female, age 72, unknown 28.6
1851 Male, age 51, unknown 27.8
1889 Female, age 72, unknown 27.5
2665 Male, age 74, both hemispheres 26.7
1941 Male, age 53, unknown 26.2
2590 Female, age 75, unknown 25.2
2699 Male, age 18, unknown 24.4
2241 Male, age 72, unknown 22.2
Superior colliculus
nTPM: 27.6
1796 Male, age 53, unknown 30.5
2261 Male, age 18, unknown 30.1
1995 Male, age 72, unknown 29.8
2664 Male, age 75, both hemispheres 28.5
2087 Female, age 72, unknown 28.0
1839 Male, age 51, unknown 27.6
2668 Female, age 75, unknown 27.6
1913 Female, age 42, unknown 27.4
2587 Male, age 74, left hemisphere 24.1
1895 Male, age 76, right hemisphere 22.8
Ventral tegmental area
nTPM: 26.1
2410 Female, age 72, unknown 30.7
1942 Male, age 51, unknown 27.1
1915 Female, age 42, unknown 26.3
2021 Male, age 53, unknown 25.7
2223 Female, age 72, unknown 24.2
2218 Male, age 76, both hemispheres 22.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 183

Max nTPM: 54.1
Min nTPM: 12.5
Std nTPM: 5.8
Median nTPM: 25.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 54.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 46.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 39.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 39.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 38.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 38.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 37.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 37.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 37.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 36.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.2
FF:10158-103A5 76 years, female 15.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 15.7
Min nTPM: 8.7
Sample A Female 15.7
Sample B Female 11.9
Sample C Male 10.8
Sample D Male 8.7
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 12.0
Sample A Female 14.1
Sample B Female 12.0
Sample C Male 18.0
Sample D Male 15.2
Periaqueductal gray
nTPM: 11.6
Samples: 3

Max nTPM: 13.1
Min nTPM: 10.3
Sample B Female 11.4
Sample C Male 13.1
Sample D Male 10.3
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 20.4
Min nTPM: 15.9
Sample A Female 20.4
Sample B Female 15.9
Sample C Male 16.9
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.7
Sample A Male 23.2
Sample B Male 18.7
Sample C Female 19.9
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71020951 Antisense, RP_050517_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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