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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:53.5 nTPM
HPA Brain:114.9 nTPM
GTEx:53.5 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:103.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 99.8
2565 Male, age 75, midline 150.4
2048 Male, age 55, midline 95.8
1981 Female, age 72, midline 86.5
2816 Male, age 47, midline 85.9
2194 Female, age 79, both hemispheres 80.4
Cervical spinal cord, dorsal horn
nTPM: 84.0
2721 Male, age 90, both hemispheres 97.0
2173 Female, age 72, unknown 85.8
2297 Male, age 75, both hemispheres 84.9
1877 Male, age 55, unknown 82.4
2069 Male, age 47, both hemispheres 81.3
2296 Male, age 66, both hemispheres 72.8
Cervical spinal cord, ventral horn
nTPM: 114.9
2480 Male, age 75, both hemispheres 148.2
2809 Male, age 90, both hemispheres 146.6
2295 Male, age 66, both hemispheres 116.6
2098 Female, age 72, unknown 114.7
2820 Female, age 79, both hemispheres 87.7
2068 Male, age 55, unknown 75.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 53.5
Samples: 204

Max nTPM: 114.8
Min nTPM: 24.1
Std nTPM: 15.1
Median nTPM: 50.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 114.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 106.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 101.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 98.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 91.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 86.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 83.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 83.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 80.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 80.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 79.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 79.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 78.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 77.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 77.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 77.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 76.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 75.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 74.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 74.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 73.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 73.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 73.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 72.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 71.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 70.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 70.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 69.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 68.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 67.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 66.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 66.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 66.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 65.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 64.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 64.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 64.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 63.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 63.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 62.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 62.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 62.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 61.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 61.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 60.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 60.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 60.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 60.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 59.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 59.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 59.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 58.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 58.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 57.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 57.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 57.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 57.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 56.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 56.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 56.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 56.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 56.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 55.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 55.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 55.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 55.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 55.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 54.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 54.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 54.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 53.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 53.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 53.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 53.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 53.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 53.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 53.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 53.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 53.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 52.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 52.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 52.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 51.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 51.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 51.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 50.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 50.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 50.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 50.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 50.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 50.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 50.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 50.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 49.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 49.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 49.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 48.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 48.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 48.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 47.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 47.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 47.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 47.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 47.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 47.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 46.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 46.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 46.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 46.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 46.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 46.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 46.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 46.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 46.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 45.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 45.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 45.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 45.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 45.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 45.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 45.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 44.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 44.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 44.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 44.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 43.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 43.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 43.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 43.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 42.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 42.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 42.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 42.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 41.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 41.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 41.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 41.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 41.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 41.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 41.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 40.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 40.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 40.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 40.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 40.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 40.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 40.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 40.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 39.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 39.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 39.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 39.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 37.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 37.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 37.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 37.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 36.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 36.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 36.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 36.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 36.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 35.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 35.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 33.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 32.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 32.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 31.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 31.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 31.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 30.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 30.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 28.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 26.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 25.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 25.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 24.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 30.1
FF:10159-103A6 76 years, female 30.4
FF:10181-103D1 60 years, female 29.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 92.3
Samples: 4

Max nTPM: 120.8
Min nTPM: 60.9
Sample A Female 120.8
Sample B Female 60.9
Sample C Male 85.2
Sample D Male 102.2
Ventral spinal cord
nTPM: 103.3
Samples: 4

Max nTPM: 121.0
Min nTPM: 81.8
Sample A Female 121.0
Sample B Female 98.7
Sample C Male 111.5
Sample D Male 81.8

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