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  • NDUFA12
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:151.4 nTPM
HPA Brain:51.3 nTPM
GTEx:151.4 nTPM
FANTOM5:161.5 Scaled Tags Per Million
Pig:131.3 nTPM
Mouse:320.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Sample id Sample description nTPM
Amygdala
nTPM: 51.3
2814 Male, age 76, right hemisphere 69.7
2514 Male, age 75, right hemisphere 49.3
1987 Female, age 91, left hemisphere 47.9
2695 Female, age 67, right hemisphere 46.7
2517 Female, age 94, left hemisphere 43.1
Basal amygdala
nTPM: 40.1
2609 Male, age 75, right hemisphere 47.0
1955 Male, age 76, both hemispheres 46.1
2685 Female, age 94, left hemisphere 45.4
2243 Female, age 91, right hemisphere 38.4
2110 Male, age 80, left hemisphere 37.7
2827 Female, age 67, right hemisphere 26.1
Central amygdala
nTPM: 49.3
1905 Male, age 76, both hemispheres 69.4
2826 Female, age 94, left hemisphere 59.9
2239 Male, age 80, left hemisphere 39.7
2515 Male, age 75, right hemisphere 39.4
2701 Female, age 91, right hemisphere 38.1
Corticomedial amygdala
nTPM: 42.0
2242 Female, age 91, right hemisphere 46.9
2429 Female, age 94, left hemisphere 46.2
2240 Male, age 76, both hemispheres 44.5
2829 Male, age 80, left hemisphere 44.4
2428 Male, age 75, right hemisphere 44.1
2535 Female, age 67, right hemisphere 25.7
Lateral amygdala
nTPM: 41.6
1883 Male, age 76, both hemispheres 62.4
2516 Male, age 75, right hemisphere 49.5
2534 Female, age 94, left hemisphere 47.9
2256 Male, age 80, left hemisphere 31.4
2830 Female, age 67, right hemisphere 30.8
2255 Female, age 91, right hemisphere 27.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.4
Samples: 181

Max nTPM: 525.9
Min nTPM: 84.6
Std nTPM: 46.8
Median nTPM: 141.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 525.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 328.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 276.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 271.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 269.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 258.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 237.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 234.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 228.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 226.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 215.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 215.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 208.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 208.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 206.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 204.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 204.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 199.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 197.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 195.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 192.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 187.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 186.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 185.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 183.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 183.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 182.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 182.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 182.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 181.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 181.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 180.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 178.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 178.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 178.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 176.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 175.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 175.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 174.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 173.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 172.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 172.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 170.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 169.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 165.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 164.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 160.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 159.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 159.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 159.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 159.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 157.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 156.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 156.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 154.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 153.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 153.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 152.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 152.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 152.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 149.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 149.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 149.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 148.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 148.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 148.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 147.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 147.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 146.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 146.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 146.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 146.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 145.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 145.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 145.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 145.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 144.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 143.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 143.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 142.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 142.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 141.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 141.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 140.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 140.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 139.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 139.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 139.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 138.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 138.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 137.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 137.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 136.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 134.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 134.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 134.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 134.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 134.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 134.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 133.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 133.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 132.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 132.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 132.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 131.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 131.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 130.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 129.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 128.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 128.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 128.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 128.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 127.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 127.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 126.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 126.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 126.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 125.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 124.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 123.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 122.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 122.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 122.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 121.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 121.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 121.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 118.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 118.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 118.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 117.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 116.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 114.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 114.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 113.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 111.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 110.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 108.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 104.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 99.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 99.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 98.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 96.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.5
FF:10151-102I7 76 years, female 161.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.3
Pig sample Sample description nTPM
Amygdala
nTPM: 131.3
Samples: 4

Max nTPM: 171.7
Min nTPM: 103.6
Sample A Female 171.7
Sample B Female 126.3
Sample C Male 123.5
Sample D Male 103.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 320.4
Samples: 4

Max nTPM: 344.2
Min nTPM: 291.6
Sample A Male 319.9
Sample B Male 325.8
Sample C Female 344.2
Sample D Female 291.6

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