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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:50.6 nTPM
HPA Brain:73.2 nTPM
GTEx:50.6 nTPM
FANTOM5:46.7 Scaled Tags Per Million
Pig:168.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 62.2
2565 Male, age 75, midline 71.6
1981 Female, age 72, midline 68.8
2194 Female, age 79, both hemispheres 60.2
2048 Male, age 55, midline 58.2
2816 Male, age 47, midline 52.0
Cervical spinal cord, dorsal horn
nTPM: 73.2
2721 Male, age 90, both hemispheres 79.4
2069 Male, age 47, both hemispheres 76.8
2297 Male, age 75, both hemispheres 76.5
1877 Male, age 55, unknown 73.5
2173 Female, age 72, unknown 71.0
2296 Male, age 66, both hemispheres 62.2
Cervical spinal cord, ventral horn
nTPM: 67.2
2809 Male, age 90, both hemispheres 77.5
2480 Male, age 75, both hemispheres 76.2
2098 Female, age 72, unknown 68.2
2295 Male, age 66, both hemispheres 68.2
2068 Male, age 55, unknown 61.5
2820 Female, age 79, both hemispheres 51.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 50.6
Samples: 204

Max nTPM: 82.1
Min nTPM: 29.9
Std nTPM: 11.0
Median nTPM: 49.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 80.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 80.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 80.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 78.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 76.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 76.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 73.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 72.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 71.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 71.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 71.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 71.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 70.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 69.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 69.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 68.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 68.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 67.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 65.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 64.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 64.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 62.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 61.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 59.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 58.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 58.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 58.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 58.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 58.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 57.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 57.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 56.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 56.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 56.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 56.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 55.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 55.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 55.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 55.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 55.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 54.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 54.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 54.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 54.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 54.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 54.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 54.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 54.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 54.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 53.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 53.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 53.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 53.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 53.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 53.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 52.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 52.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 52.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 52.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 52.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 52.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 52.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 51.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 51.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 51.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 51.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 51.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 51.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 51.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 51.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 51.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 51.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 50.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 50.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 50.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 50.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 50.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 49.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 49.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 49.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 49.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 49.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 49.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 49.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 48.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 48.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 48.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 48.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 47.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 47.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 47.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 47.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 47.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 46.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 46.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 46.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 46.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 46.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 46.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 46.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 46.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 46.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 45.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 45.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 45.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 45.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 45.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 45.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 44.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 44.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 44.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 44.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 44.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 44.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 44.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 44.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 43.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 43.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 43.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 43.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 43.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 43.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 42.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 42.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 42.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 42.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 42.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 42.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 42.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 42.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 41.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 41.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 40.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 40.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 40.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 40.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 40.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 39.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 39.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 39.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 39.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 39.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 39.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 39.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 38.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 38.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 38.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 38.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 38.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 37.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 37.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 37.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 37.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 37.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 37.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 36.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 36.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 36.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 36.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 36.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 35.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 35.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 34.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 34.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 34.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 34.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 34.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 32.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 30.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 29.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 46.7
FF:10181-103D1 60 years, female 48.9
FF:10159-103A6 76 years, female 44.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 164.9
Samples: 4

Max nTPM: 195.9
Min nTPM: 141.9
Sample A Female 195.9
Sample B Female 141.9
Sample C Male 151.7
Sample D Male 170.1
Ventral spinal cord
nTPM: 168.7
Samples: 4

Max nTPM: 189.4
Min nTPM: 153.1
Sample A Female 153.1
Sample B Female 189.4
Sample C Male 163.5
Sample D Male 168.6

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