MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:23.1 nTPM
GTEx:11.1 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:13.1 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.1
2019 Male, age 18, unknown 32.5
2666 Male, age 74, left hemisphere 20.7
2586 Male, age 75, left hemisphere 18.8
2828 Female, age 72, unknown 17.5
1827 Male, age 72, unknown 16.5
2219 Male, age 76, both hemispheres 16.5
1830 Male, age 51, unknown 13.4
1833 Male, age 53, unknown 11.9
2411 Female, age 72, unknown 11.7
1870 Female, age 42, unknown 11.1
Dorsal raphe nucleus
nTPM: 13.0
2750 Male, age 76, both hemispheres 15.8
1828 Male, age 53, unknown 13.4
2298 Female, age 72, unknown 12.8
2016 Female, age 72, unknown 12.4
2047 Male, age 72, unknown 10.6
Inferior colliculus
nTPM: 14.9
2097 Female, age 72, unknown 17.5
1890 Male, age 53, unknown 17.4
1848 Female, age 42, unknown 12.9
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Periaquaductal grey, anterior
nTPM: 15.2
1795 Male, age 51, unknown 19.4
1947 Male, age 18, unknown 14.5
2502 Female, age 75, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 13.5
1831 Male, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 14.8
2464 Female, age 72, unknown 12.0
1840 Male, age 53, unknown 10.5
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 20.4
2140 Male, age 76, both hemispheres 17.8
2053 Male, age 18, unknown 12.7
Pretectal area
nTPM: 23.1
2007 Male, age 72, unknown 38.1
1817 Female, age 42, unknown 34.5
1816 Male, age 51, unknown 30.8
1944 Female, age 72, unknown 27.3
2407 Male, age 75, both hemispheres 26.1
1815 Male, age 53, unknown 25.3
2316 Male, age 76, right hemisphere 17.8
2273 Male, age 74, both hemispheres 17.0
2667 Female, age 75, unknown 13.7
2224 Female, age 72, unknown 12.9
2825 Male, age 18, unknown 10.8
Red nucleus
nTPM: 16.3
2785 Male, age 18, unknown 29.8
2584 Male, age 75, left hemisphere 21.9
2725 Female, age 75, unknown 19.1
2823 Male, age 76, right hemisphere 16.2
2227 Male, age 72, unknown 15.9
2588 Male, age 74, left hemisphere 15.4
2769 Male, age 72, unknown 15.0
1865 Male, age 51, unknown 13.9
1904 Male, age 53, unknown 12.7
2503 Female, age 72, unknown 12.2
1954 Female, age 42, unknown 12.0
1821 Female, age 72, unknown 10.8
Substantia nigra
nTPM: 19.7
2590 Female, age 75, unknown 32.3
1941 Male, age 53, unknown 31.3
2583 Male, age 75, right hemisphere 26.9
2665 Male, age 74, both hemispheres 25.9
1889 Female, age 72, unknown 20.7
1851 Male, age 51, unknown 14.7
1916 Female, age 42, unknown 14.3
2241 Male, age 72, unknown 11.0
2699 Male, age 18, unknown 10.4
2409 Female, age 72, unknown 9.3
Superior colliculus
nTPM: 17.5
2087 Female, age 72, unknown 23.7
2664 Male, age 75, both hemispheres 22.7
2261 Male, age 18, unknown 20.0
1995 Male, age 72, unknown 18.8
2587 Male, age 74, left hemisphere 18.4
1796 Male, age 53, unknown 15.8
1913 Female, age 42, unknown 15.5
2668 Female, age 75, unknown 15.2
1839 Male, age 51, unknown 14.0
1895 Male, age 76, right hemisphere 10.8
Ventral tegmental area
nTPM: 14.3
2218 Male, age 76, both hemispheres 16.7
1942 Male, age 51, unknown 15.4
2223 Female, age 72, unknown 15.0
1915 Female, age 42, unknown 13.9
2021 Male, age 53, unknown 12.5
2410 Female, age 72, unknown 12.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 36.8
Min nTPM: 1.8
Std nTPM: 5.5
Median nTPM: 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 28.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 25.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 22.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 20.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 20.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 19.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 9.0
Sample A Female 9.4
Sample B Female 9.5
Sample C Male 10.2
Sample D Male 9.0
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.9
Sample A Female 9.3
Sample B Female 8.3
Sample C Male 6.9
Sample D Male 8.7
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 11.6
Min nTPM: 7.6
Sample B Female 7.6
Sample C Male 11.6
Sample D Male 7.6
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.2
Sample A Female 10.5
Sample B Female 6.2
Sample C Male 8.0
Sample D Male 9.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 12.1
Sample A Male 14.4
Sample B Male 12.1
Sample C Female 13.6
Sample D Female 12.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
75041433 Antisense, RP_060412_04_B03, Mouse strain C57BL/6J (56 days, male) 2.7
69672509 Antisense, RP_050428_03_H09, Mouse strain C57BL/6J (56 days, male) 1.6

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