HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:35.2 nTPM
GTEx:10.7 nTPM
FANTOM5:27.9 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:18.5 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 35.2
Sample id Sample description nTPM
Hippocampus
nTPM: 30.4
1855 Male, age 76, left hemisphere 37.1
2529 Female, age 94, left hemisphere 37.0
1911 Female, age 85, right hemisphere 29.8
2621 Female, age 67, right hemisphere 27.5
2148 Female, age 91, left hemisphere 26.0
1898 Male, age 80, left hemisphere 25.1
Dentate gyrus
nTPM: 27.8
2530 Female, age 94, left hemisphere 32.6
2246 Female, age 85, both hemispheres 32.1
2528 Male, age 74, both hemispheres 30.0
2010 Male, age 76, both hemispheres 27.7
2531 Female, age 67, both hemispheres 25.5
1927 Female, age 91, both hemispheres 19.1
Entorhinal gyrus
nTPM: 32.4
2117 Female, age 91, right hemisphere 36.4
1938 Female, age 85, left hemisphere 31.9
2613 Female, age 94, left hemisphere 31.9
2686 Male, age 75, right hemisphere 31.9
2764 Male, age 80, right hemisphere 31.8
1787 Male, age 76, left hemisphere 30.7
Hippocampus, CA1
nTPM: 26.0
2527 Male, age 74, both hemispheres 37.1
1873 Female, age 85, both hemispheres 26.1
2082 Female, age 91, right hemisphere 26.0
2045 Male, age 76, both hemispheres 24.8
2749 Male, age 80, left hemisphere 16.0
Hippocampus, CA2
nTPM: 28.6
2437 Female, age 94, left hemisphere 35.7
2249 Male, age 74, both hemispheres 32.3
1940 Female, age 85, left hemisphere 28.5
1892 Male, age 76, both hemispheres 27.8
1963 Male, age 80, left hemisphere 24.2
2113 Female, age 91, right hemisphere 23.2
Hippocampus, CA3
nTPM: 28.3
2620 Female, age 94, left hemisphere 39.9
2861 Female, age 67, both hemispheres 35.0
1891 Female, age 85, both hemispheres 28.9
2436 Male, age 74, both hemispheres 25.0
1867 Male, age 76, both hemispheres 23.1
2137 Male, age 80, left hemisphere 17.7
Parahippocampal cortex
nTPM: 30.4
2692 Male, age 74, both hemispheres 45.2
2622 Female, age 67, right hemisphere 38.2
2693 Female, age 94, both hemispheres 34.0
2532 Female, age 72, left hemisphere 31.7
1933 Female, age 85, both hemispheres 30.2
2250 Female, age 67, right hemisphere 27.5
1990 Female, age 91, right hemisphere 26.2
1850 Male, age 80, both hemispheres 25.1
2018 Male, age 76, both hemispheres 23.5
2245 Female, age 91, both hemispheres 22.9
Perirhinal gyrus
nTPM: 23.8
2521 Female, age 94, right hemisphere 30.7
2848 Male, age 76, right hemisphere 24.7
1794 Male, age 80, right hemisphere 22.9
1841 Female, age 85, right hemisphere 21.8
1847 Female, age 91, left hemisphere 19.3
Subiculum
nTPM: 35.2
2438 Female, age 94, left hemisphere 45.4
2619 Male, age 74, both hemispheres 41.5
2042 Male, age 76, both hemispheres 34.3
1977 Female, age 85, both hemispheres 31.4
1901 Male, age 80, both hemispheres 30.4
2729 Female, age 91, right hemisphere 28.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.7
Samples: 255

Max nTPM: 36.6
Min nTPM: 1.9
Std nTPM: 4.6
Median nTPM: 9.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 36.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 27.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 25.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 23.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 23.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 23.2
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 21.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 20.9
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 20.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 20.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.9
FF:10153-102I9 76 years, female 34.1
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 11.8
Pig sample Sample description nTPM
Subiculum
nTPM: 11.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 8.3
Sample A Female 14.8
Sample B Female 9.7
Sample C Male 12.3
Sample D Male 8.3
Dorsal hippocampus
nTPM: 6.0
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.4
Sample A Female 7.1
Sample B Female 5.9
Sample C Male 6.6
Sample D Male 4.4
Entorhinal cortex
nTPM: 11.8
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.3
Sample A Female 12.2
Sample B Female 10.3
Sample C Male 12.4
Sample D Male 12.3
Ventral hippocampus
nTPM: 7.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 4.7
Sample A Female 6.5
Sample B Female 6.2
Sample C Male 11.8
Sample D Male 4.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 18.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 23.0
Min nTPM: 16.0
Sample A Male 18.3
Sample B Male 16.0
Sample C Female 16.9
Sample D Female 23.0
Hippocampal formation
nTPM: 17.9
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 20.3
Sample C Female 20.0
Sample D Female 16.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
70302228 Antisense, RP_050607_03_H04, Mouse strain C57BL/6J (56 days, male) 3.2
74047717 Antisense, RP_051214_01_G12, Mouse strain C57BL/6J (56 days, male) 1.7

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