MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:108.0 nTPM
GTEx:8.7 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:145.3 nTPM
Mouse:36.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
2219 Male, age 76, both hemispheres 97.5
1833 Male, age 53, unknown 57.7
2828 Female, age 72, unknown 56.8
1827 Male, age 72, unknown 55.6
2586 Male, age 75, left hemisphere 52.6
1830 Male, age 51, unknown 46.6
2411 Female, age 72, unknown 45.9
2666 Male, age 74, left hemisphere 44.3
1870 Female, age 42, unknown 41.4
2019 Male, age 18, unknown 36.4
Dorsal raphe nucleus
nTPM: 63.0
2016 Female, age 72, unknown 74.2
1828 Male, age 53, unknown 68.0
2298 Female, age 72, unknown 64.2
2047 Male, age 72, unknown 61.5
2750 Male, age 76, both hemispheres 46.8
Inferior colliculus
nTPM: 65.6
2097 Female, age 72, unknown 77.9
1890 Male, age 53, unknown 64.8
2849 Male, age 72, unknown 64.4
1848 Female, age 42, unknown 55.1
Median raphe nucleus
nTPM: 89.4
2220 Male, age 76, midline 89.4
Periaquaductal grey, anterior
nTPM: 49.7
2502 Female, age 75, unknown 54.9
1947 Male, age 18, unknown 47.5
1795 Male, age 51, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 65.4
1840 Male, age 53, unknown 76.9
2850 Male, age 76, both hemispheres 68.8
1831 Male, age 72, unknown 60.4
2464 Female, age 72, unknown 55.8
Periaquaductal grey, lateral
nTPM: 60.3
2140 Male, age 76, both hemispheres 71.7
2053 Male, age 18, unknown 55.0
2272 Male, age 74, both hemispheres 54.2
Pretectal area
nTPM: 58.7
2667 Female, age 75, unknown 72.3
1944 Female, age 72, unknown 70.2
2273 Male, age 74, both hemispheres 64.7
2224 Female, age 72, unknown 63.0
1815 Male, age 53, unknown 60.7
1816 Male, age 51, unknown 57.5
2407 Male, age 75, both hemispheres 55.9
2825 Male, age 18, unknown 53.6
2316 Male, age 76, right hemisphere 53.2
1817 Female, age 42, unknown 52.3
2007 Male, age 72, unknown 42.3
Red nucleus
nTPM: 44.3
1821 Female, age 72, unknown 56.7
2725 Female, age 75, unknown 55.1
2503 Female, age 72, unknown 47.2
2584 Male, age 75, left hemisphere 46.0
1904 Male, age 53, unknown 44.4
2588 Male, age 74, left hemisphere 43.6
2227 Male, age 72, unknown 41.7
2769 Male, age 72, unknown 40.9
1865 Male, age 51, unknown 40.2
2785 Male, age 18, unknown 40.2
1954 Female, age 42, unknown 39.7
2823 Male, age 76, right hemisphere 35.8
Substantia nigra
nTPM: 108.0
2699 Male, age 18, unknown 195.8
1916 Female, age 42, unknown 175.9
2241 Male, age 72, unknown 162.7
1851 Male, age 51, unknown 124.0
2409 Female, age 72, unknown 95.4
1941 Male, age 53, unknown 78.5
1889 Female, age 72, unknown 68.9
2665 Male, age 74, both hemispheres 68.6
2590 Female, age 75, unknown 57.5
2583 Male, age 75, right hemisphere 52.8
Superior colliculus
nTPM: 54.3
1796 Male, age 53, unknown 63.3
2087 Female, age 72, unknown 61.2
2664 Male, age 75, both hemispheres 59.6
1895 Male, age 76, right hemisphere 58.4
2668 Female, age 75, unknown 53.0
1995 Male, age 72, unknown 50.9
2261 Male, age 18, unknown 50.5
1839 Male, age 51, unknown 50.3
2587 Male, age 74, left hemisphere 49.8
1913 Female, age 42, unknown 45.8
Ventral tegmental area
nTPM: 98.6
2218 Male, age 76, both hemispheres 139.2
1915 Female, age 42, unknown 124.0
1942 Male, age 51, unknown 102.5
2410 Female, age 72, unknown 100.7
2021 Male, age 53, unknown 65.6
2223 Female, age 72, unknown 59.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 183

Max nTPM: 37.2
Min nTPM: 0.8
Std nTPM: 5.9
Median nTPM: 7.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 37.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 26.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 26.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 24.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 23.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 145.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.3
Samples: 4

Max nTPM: 198.8
Min nTPM: 80.4
Sample A Female 177.9
Sample B Female 124.0
Sample C Male 198.8
Sample D Male 80.4
Midbrain
nTPM: 138.3
Samples: 4

Max nTPM: 156.4
Min nTPM: 98.5
Sample A Female 148.6
Sample B Female 98.5
Sample C Male 149.7
Sample D Male 156.4
Periaqueductal gray
nTPM: 92.7
Samples: 3

Max nTPM: 109.4
Min nTPM: 82.7
Sample B Female 82.7
Sample C Male 109.4
Sample D Male 86.0
Superior colliculi
nTPM: 108.0
Samples: 4

Max nTPM: 128.0
Min nTPM: 85.8
Sample A Female 111.5
Sample B Female 85.8
Sample C Male 128.0
Sample D Male 106.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 33.7
Sample A Male 33.7
Sample B Male 37.5
Sample C Female 38.3
Sample D Female 36.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763546 Antisense, RP_050921_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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