MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.6 nTPM
HPA Brain:59.8 nTPM
GTEx:59.6 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:53.5 nTPM
Mouse:161.9 nTPM
Allen mouse:10.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2586 Male, age 75, left hemisphere 61.8
2019 Male, age 18, unknown 61.3
1870 Female, age 42, unknown 59.4
1833 Male, age 53, unknown 54.8
2828 Female, age 72, unknown 53.6
1830 Male, age 51, unknown 53.1
1827 Male, age 72, unknown 53.0
2666 Male, age 74, left hemisphere 52.4
2411 Female, age 72, unknown 52.2
2219 Male, age 76, both hemispheres 46.8
Dorsal raphe nucleus
nTPM: 54.6
1828 Male, age 53, unknown 58.6
2750 Male, age 76, both hemispheres 57.8
2047 Male, age 72, unknown 55.6
2016 Female, age 72, unknown 50.7
2298 Female, age 72, unknown 50.5
Inferior colliculus
nTPM: 54.9
1848 Female, age 42, unknown 57.3
2849 Male, age 72, unknown 55.5
2097 Female, age 72, unknown 55.1
1890 Male, age 53, unknown 51.9
Median raphe nucleus
nTPM: 52.9
2220 Male, age 76, midline 52.9
Periaquaductal grey, anterior
nTPM: 55.8
2502 Female, age 75, unknown 66.4
1947 Male, age 18, unknown 51.1
1795 Male, age 51, unknown 49.8
Periaquaductal grey, dorsal
nTPM: 50.1
1840 Male, age 53, unknown 51.9
2850 Male, age 76, both hemispheres 49.7
1831 Male, age 72, unknown 49.5
2464 Female, age 72, unknown 49.3
Periaquaductal grey, lateral
nTPM: 47.2
2053 Male, age 18, unknown 51.9
2140 Male, age 76, both hemispheres 45.3
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 56.3
1817 Female, age 42, unknown 66.5
1816 Male, age 51, unknown 61.9
1944 Female, age 72, unknown 61.8
2007 Male, age 72, unknown 61.8
2407 Male, age 75, both hemispheres 58.1
1815 Male, age 53, unknown 57.9
2667 Female, age 75, unknown 57.1
2224 Female, age 72, unknown 50.8
2825 Male, age 18, unknown 50.6
2273 Male, age 74, both hemispheres 47.6
2316 Male, age 76, right hemisphere 45.1
Red nucleus
nTPM: 56.2
1821 Female, age 72, unknown 62.8
1865 Male, age 51, unknown 59.7
2785 Male, age 18, unknown 58.9
1954 Female, age 42, unknown 58.4
1904 Male, age 53, unknown 57.9
2584 Male, age 75, left hemisphere 57.0
2769 Male, age 72, unknown 57.0
2227 Male, age 72, unknown 56.2
2588 Male, age 74, left hemisphere 55.3
2823 Male, age 76, right hemisphere 51.1
2503 Female, age 72, unknown 51.0
2725 Female, age 75, unknown 49.0
Substantia nigra
nTPM: 59.8
1916 Female, age 42, unknown 71.1
1941 Male, age 53, unknown 64.3
1889 Female, age 72, unknown 63.2
1851 Male, age 51, unknown 61.2
2241 Male, age 72, unknown 61.0
2699 Male, age 18, unknown 60.3
2409 Female, age 72, unknown 57.7
2583 Male, age 75, right hemisphere 54.3
2665 Male, age 74, both hemispheres 53.4
2590 Female, age 75, unknown 51.2
Superior colliculus
nTPM: 56.3
2664 Male, age 75, both hemispheres 69.1
2668 Female, age 75, unknown 60.7
2587 Male, age 74, left hemisphere 58.8
2087 Female, age 72, unknown 57.9
1839 Male, age 51, unknown 57.7
1895 Male, age 76, right hemisphere 54.8
1796 Male, age 53, unknown 52.0
1913 Female, age 42, unknown 51.9
2261 Male, age 18, unknown 50.9
1995 Male, age 72, unknown 49.1
Ventral tegmental area
nTPM: 55.1
1915 Female, age 42, unknown 58.5
2223 Female, age 72, unknown 58.5
2410 Female, age 72, unknown 57.8
2218 Male, age 76, both hemispheres 56.9
1942 Male, age 51, unknown 50.3
2021 Male, age 53, unknown 48.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.6
Samples: 183

Max nTPM: 96.3
Min nTPM: 37.6
Std nTPM: 8.5
Median nTPM: 59.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 96.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 93.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 79.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 77.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 76.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 75.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 72.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 62.6
Min nTPM: 42.5
Sample A Female 62.6
Sample B Female 42.5
Sample C Male 55.9
Sample D Male 42.5
Midbrain
nTPM: 52.7
Samples: 4

Max nTPM: 62.9
Min nTPM: 46.6
Sample A Female 62.9
Sample B Female 46.6
Sample C Male 53.8
Sample D Male 47.5
Periaqueductal gray
nTPM: 44.4
Samples: 3

Max nTPM: 51.0
Min nTPM: 40.7
Sample B Female 41.4
Sample C Male 51.0
Sample D Male 40.7
Superior colliculi
nTPM: 53.5
Samples: 4

Max nTPM: 62.6
Min nTPM: 39.9
Sample A Female 62.6
Sample B Female 39.9
Sample C Male 59.6
Sample D Male 51.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 161.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.9
Samples: 4

Max nTPM: 167.1
Min nTPM: 159.4
Sample A Male 160.4
Sample B Male 160.8
Sample C Female 159.4
Sample D Female 167.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
71378583 Antisense, RP_050517_01_E09, Mouse strain C57BL/6J (56 days, male) 10.4

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