MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.1 nTPM
HPA Brain:161.4 nTPM
GTEx:43.1 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:57.0 nTPM
Mouse:92.6 nTPM
Allen mouse:13.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.9
2586 Male, age 75, left hemisphere 300.4
2019 Male, age 18, unknown 250.1
2828 Female, age 72, unknown 185.5
2666 Male, age 74, left hemisphere 151.1
1827 Male, age 72, unknown 143.6
1833 Male, age 53, unknown 116.6
1830 Male, age 51, unknown 113.9
2411 Female, age 72, unknown 113.7
2219 Male, age 76, both hemispheres 107.2
1870 Female, age 42, unknown 106.4
Dorsal raphe nucleus
nTPM: 124.0
1828 Male, age 53, unknown 159.9
2047 Male, age 72, unknown 137.0
2298 Female, age 72, unknown 125.0
2016 Female, age 72, unknown 118.7
2750 Male, age 76, both hemispheres 79.5
Inferior colliculus
nTPM: 153.6
1848 Female, age 42, unknown 163.3
1890 Male, age 53, unknown 153.3
2849 Male, age 72, unknown 149.1
2097 Female, age 72, unknown 148.8
Median raphe nucleus
nTPM: 68.3
2220 Male, age 76, midline 68.3
Periaquaductal grey, anterior
nTPM: 154.8
2502 Female, age 75, unknown 182.7
1795 Male, age 51, unknown 159.0
1947 Male, age 18, unknown 122.7
Periaquaductal grey, dorsal
nTPM: 115.1
2464 Female, age 72, unknown 145.4
1840 Male, age 53, unknown 132.2
1831 Male, age 72, unknown 101.5
2850 Male, age 76, both hemispheres 81.3
Periaquaductal grey, lateral
nTPM: 93.7
2272 Male, age 74, both hemispheres 101.3
2140 Male, age 76, both hemispheres 91.1
2053 Male, age 18, unknown 88.7
Pretectal area
nTPM: 161.4
2007 Male, age 72, unknown 244.9
1817 Female, age 42, unknown 236.8
1816 Male, age 51, unknown 215.1
1944 Female, age 72, unknown 208.7
2667 Female, age 75, unknown 164.8
1815 Male, age 53, unknown 160.2
2407 Male, age 75, both hemispheres 135.5
2273 Male, age 74, both hemispheres 115.7
2825 Male, age 18, unknown 104.8
2224 Female, age 72, unknown 98.3
2316 Male, age 76, right hemisphere 90.6
Red nucleus
nTPM: 147.0
2785 Male, age 18, unknown 232.1
2588 Male, age 74, left hemisphere 182.1
2584 Male, age 75, left hemisphere 172.1
2769 Male, age 72, unknown 148.1
2227 Male, age 72, unknown 145.6
1954 Female, age 42, unknown 142.3
1821 Female, age 72, unknown 136.3
2503 Female, age 72, unknown 135.0
2725 Female, age 75, unknown 123.5
1865 Male, age 51, unknown 120.5
1904 Male, age 53, unknown 118.3
2823 Male, age 76, right hemisphere 108.1
Substantia nigra
nTPM: 136.5
1889 Female, age 72, unknown 178.6
2665 Male, age 74, both hemispheres 176.3
1916 Female, age 42, unknown 155.1
1941 Male, age 53, unknown 153.1
2583 Male, age 75, right hemisphere 146.8
1851 Male, age 51, unknown 133.2
2590 Female, age 75, unknown 125.4
2409 Female, age 72, unknown 106.3
2241 Male, age 72, unknown 95.1
2699 Male, age 18, unknown 94.9
Superior colliculus
nTPM: 154.4
2664 Male, age 75, both hemispheres 281.9
2087 Female, age 72, unknown 190.0
2261 Male, age 18, unknown 146.5
1839 Male, age 51, unknown 145.4
2668 Female, age 75, unknown 142.2
1796 Male, age 53, unknown 136.4
1895 Male, age 76, right hemisphere 134.6
1995 Male, age 72, unknown 129.2
2587 Male, age 74, left hemisphere 128.5
1913 Female, age 42, unknown 109.0
Ventral tegmental area
nTPM: 107.9
2410 Female, age 72, unknown 129.8
1915 Female, age 42, unknown 122.8
1942 Male, age 51, unknown 115.7
2021 Male, age 53, unknown 95.9
2223 Female, age 72, unknown 93.5
2218 Male, age 76, both hemispheres 89.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.1
Samples: 183

Max nTPM: 123.1
Min nTPM: 10.6
Std nTPM: 19.3
Median nTPM: 42.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 123.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 93.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 83.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 83.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 80.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 77.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 75.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 74.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 17.0
Sample A Female 37.0
Sample B Female 17.0
Sample C Male 24.8
Sample D Male 22.9
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 61.1
Min nTPM: 22.9
Sample A Female 24.7
Sample B Female 22.9
Sample C Male 61.1
Sample D Male 56.6
Periaqueductal gray
nTPM: 23.8
Samples: 3

Max nTPM: 28.1
Min nTPM: 20.6
Sample B Female 22.6
Sample C Male 28.1
Sample D Male 20.6
Superior colliculi
nTPM: 57.0
Samples: 4

Max nTPM: 84.7
Min nTPM: 21.5
Sample A Female 65.4
Sample B Female 21.5
Sample C Male 84.7
Sample D Male 56.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.6
Samples: 4

Max nTPM: 100.0
Min nTPM: 88.0
Sample A Male 88.0
Sample B Male 92.1
Sample C Female 100.0
Sample D Female 90.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.8
74958656 Antisense, RP_060315_05_B12, Mouse strain C57BL/6J (56 days, male) 15.4
70231731 Antisense, RP_050526_01_G04, Mouse strain C57BL/6J (56 days, male) 12.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo