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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:183.6 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:169.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003906Antibody CAB015350Antibody CAB015424
Glial cells MediumLowNot detected
Neuronal cells MediumMediumLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 183.6
Samples: 300

Max nTPM: 320.6
Min nTPM: 109.1
Std nTPM: 35.4
Median nTPM: 180.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 320.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 318.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 296.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 295.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 285.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 279.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 278.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 274.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 269.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 264.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 262.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 260.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 259.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 256.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 255.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 250.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 249.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 248.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 248.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 241.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 240.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 239.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 239.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 235.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 235.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 233.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 231.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 229.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 227.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 227.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 226.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 225.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 224.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 223.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 222.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 222.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 221.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 221.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 220.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 219.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 217.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 216.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 216.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 215.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 215.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 214.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 214.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 213.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 213.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 213.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 213.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 212.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 212.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 212.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 211.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 209.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 209.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 209.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 209.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 208.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 208.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 208.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 207.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 207.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 206.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 206.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 205.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 205.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 205.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 205.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 205.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 204.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 204.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 203.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 203.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 202.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 202.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 202.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 201.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 201.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 200.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 200.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 199.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 199.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 199.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 199.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 198.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 198.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 197.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 197.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 196.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 196.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 195.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 195.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 194.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 194.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 194.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 194.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 193.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 193.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 192.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 191.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 191.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 190.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 190.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 190.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 190.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 189.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 189.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 189.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 188.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 188.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 188.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 188.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 188.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 187.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 187.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 186.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 186.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 186.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 186.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 186.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 185.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 185.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 185.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 185.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 185.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 184.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 184.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 183.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 183.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 183.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 183.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 183.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 183.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 183.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 182.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 182.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 181.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 181.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 181.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 181.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 181.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 181.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 181.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 181.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 180.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 180.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 180.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 180.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 180.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 179.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 179.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 179.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 179.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 179.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 178.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 178.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 178.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 177.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 177.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 177.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 177.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 177.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 176.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 176.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 176.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 176.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 176.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 175.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 175.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 174.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 174.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 174.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 174.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 173.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 173.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 172.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 171.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 170.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 170.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 170.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 170.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 170.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 170.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 169.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 169.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 169.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 169.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 169.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 168.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 168.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 168.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 168.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 167.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 167.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 167.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 167.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 167.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 166.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 165.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 165.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 164.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 163.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 163.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 163.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 163.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 163.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 163.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 162.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 162.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 161.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 161.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 161.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 160.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 160.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 160.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 160.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 159.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 159.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 159.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 159.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 159.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 159.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 159.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 158.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 158.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 158.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 157.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 157.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 157.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 157.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 157.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 157.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 156.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 156.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 156.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 155.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 155.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 155.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 154.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 154.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 153.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 152.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 152.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 152.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 151.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 151.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 151.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 149.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 149.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 149.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 149.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 149.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 149.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 148.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 148.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 148.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 146.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 146.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 146.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 146.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 146.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 146.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 145.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 145.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 144.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 144.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 144.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 143.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 143.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 142.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 142.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 142.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 141.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 141.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 141.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 141.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 139.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 138.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 138.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 137.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 136.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 136.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 135.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 135.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 134.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 133.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 130.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 130.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 129.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 127.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 123.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 122.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 115.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 112.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 110.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.0
FF:10164-103B2 76 years, female 47.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.9
Pig sample Sample description nTPM
Caudate
nTPM: 169.9
Samples: 4

Max nTPM: 194.9
Min nTPM: 143.9
Sample A Female 143.9
Sample B Female 176.2
Sample C Male 194.9
Sample D Male 164.5

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