We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BCAP31
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BCAP31
TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
Tissue methods
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

47.225
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:118.2 nTPM
GTEx:171.7 nTPM
FANTOM5:39.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003906Antibody CAB015350Antibody CAB015424
Glial cells MediumMediumNot detected
Neuronal cells HighMediumLow







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA003906
Hippocampal formation mean intensity 47.225
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 29.462
Molecular layer of the dentate gyrus 21.260
Granular dentate gyrus 30.471
CA1 - oriens layer 29.865
CA1 - pyramidal layer 30.867
CA1 - radiatum layer 29.368
CA2 - oriens layer 28.915
CA2 - pyramidal layer 47.225
CA2 - radiatum layer 32.534
CA3 - oriens layer 32.216
CA3 - pyramidal layer 38.376
CA3 - radiatum layer 29.901
Stratum lucidum 26.518
Lacunosum moleculare 18.880
Subiculum 24.330

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.2
Sample id Sample description nTPM
Hippocampus
nTPM: 118.2
1898 Male, age 80, left hemisphere 152.4
1855 Male, age 76, left hemisphere 139.5
2621 Female, age 67, right hemisphere 124.9
2529 Female, age 94, left hemisphere 102.2
2148 Female, age 91, left hemisphere 101.3
1911 Female, age 85, right hemisphere 89.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 171.7
Samples: 255

Max nTPM: 295.9
Min nTPM: 106.2
Std nTPM: 35.8
Median nTPM: 166.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 295.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 290.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 289.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 277.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 270.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 269.9
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 265.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 264.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 257.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 252.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 244.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 244.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 243.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 241.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 238.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 228.4
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 227.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 227.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 225.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 225.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 225.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 224.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 223.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 221.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 218.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 216.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 215.3
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 214.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 214.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 214.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 211.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 209.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 209.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 209.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 208.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 208.2
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 207.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 207.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 207.3
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 203.9
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 203.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 203.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 201.2
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 200.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 198.7
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 198.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 197.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 197.2
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 196.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 195.7
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 195.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 195.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 193.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 192.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 192.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 192.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 191.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 191.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 190.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 190.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 190.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 190.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 190.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 190.4
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 190.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 189.4
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 189.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 188.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 188.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 188.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 187.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 187.0
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 186.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 185.0
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 184.9
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 184.8
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 184.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 184.0
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 183.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 183.3
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 181.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 181.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 181.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 181.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 180.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 180.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 180.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 180.3
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 180.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 180.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 179.8
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 179.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 179.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 179.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 179.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 178.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 178.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 178.1
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 178.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 178.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 176.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 176.1
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 175.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 174.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 173.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 173.2
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 173.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 172.4
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 172.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 172.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 171.6
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 171.4
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 170.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 170.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 169.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 169.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 169.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 169.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 169.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 168.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 167.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 167.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 167.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 167.1
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 166.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 166.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 166.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 166.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 165.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 165.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 165.3
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 164.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 164.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 164.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 164.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 163.7
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 163.5
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 163.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 162.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 162.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 162.0
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 162.0
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 161.3
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 161.2
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 160.8
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 160.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 160.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 160.5
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 160.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 160.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 160.0
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 159.4
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 159.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 158.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 158.4
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 158.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 158.1
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 156.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 155.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 155.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 155.5
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 155.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 153.9
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 153.9
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 153.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 153.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 153.0
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 152.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 152.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 152.3
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 152.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 152.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 151.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 151.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 151.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 150.4
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 150.1
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 149.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 149.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 148.9
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 148.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 148.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 148.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 148.1
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 147.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 147.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 146.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 146.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 145.9
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 145.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 145.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 145.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 145.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 145.2
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 145.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 145.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 144.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 144.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 143.7
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 143.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 143.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 142.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 141.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 141.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 140.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 139.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 139.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 139.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 138.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 138.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 138.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 137.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 137.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 137.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 137.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 136.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 136.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 136.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 135.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 132.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 132.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 132.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 132.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 131.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 131.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 131.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 130.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 129.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 129.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 128.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 128.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 128.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 128.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 127.1
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 126.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 126.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 126.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 126.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 125.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 124.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 124.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 124.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 123.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 122.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 122.8
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 122.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 122.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 121.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 120.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 120.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 118.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 111.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 110.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 106.2
Show allShow less

HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.5
FF:10169-103B7 60 years, female 46.7
FF:10153-102I9 76 years, female 32.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo