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ATP6V0C
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  • ATP6V0C
TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:382.1 nTPM
HPA Brain:497.0 nTPM
GTEx:382.1 nTPM
FANTOM5:1092.5 Scaled Tags Per Million
Pig:435.7 nTPM
Mouse:1543.5 nTPM
Allen mouse:30.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

497.0
Sample id Sample description nTPM
Amygdala
nTPM: 455.9
2814 Male, age 76, right hemisphere 584.6
1987 Female, age 91, left hemisphere 481.3
2517 Female, age 94, left hemisphere 442.9
2514 Male, age 75, right hemisphere 399.9
2695 Female, age 67, right hemisphere 370.7
Basal amygdala
nTPM: 495.5
2243 Female, age 91, right hemisphere 632.7
2685 Female, age 94, left hemisphere 545.3
2110 Male, age 80, left hemisphere 535.7
1955 Male, age 76, both hemispheres 516.5
2609 Male, age 75, right hemisphere 430.1
2827 Female, age 67, right hemisphere 312.5
Central amygdala
nTPM: 497.0
2826 Female, age 94, left hemisphere 576.4
2239 Male, age 80, left hemisphere 550.7
1905 Male, age 76, both hemispheres 518.1
2701 Female, age 91, right hemisphere 477.9
2515 Male, age 75, right hemisphere 362.2
Corticomedial amygdala
nTPM: 467.0
2829 Male, age 80, left hemisphere 606.5
2242 Female, age 91, right hemisphere 596.2
2429 Female, age 94, left hemisphere 449.3
2240 Male, age 76, both hemispheres 440.1
2535 Female, age 67, right hemisphere 372.5
2428 Male, age 75, right hemisphere 337.4
Lateral amygdala
nTPM: 431.0
2534 Female, age 94, left hemisphere 635.2
1883 Male, age 76, both hemispheres 479.9
2255 Female, age 91, right hemisphere 455.5
2256 Male, age 80, left hemisphere 385.2
2516 Male, age 75, right hemisphere 369.9
2830 Female, age 67, right hemisphere 260.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 382.1
Samples: 181

Max nTPM: 870.8
Min nTPM: 151.0
Std nTPM: 136.9
Median nTPM: 351.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 870.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 828.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 770.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 765.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 669.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 669.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 655.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 651.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 643.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 643.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 636.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 622.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 616.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 614.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 611.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 607.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 594.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 589.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 580.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 559.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 552.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 549.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 548.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 547.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 547.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 543.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 541.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 539.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 536.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 535.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 534.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 533.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 532.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 517.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 502.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 492.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 481.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 475.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 473.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 469.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 467.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 464.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 461.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 459.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 457.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 456.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 454.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 451.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 451.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 444.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 443.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 442.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 437.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 436.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 427.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 421.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 420.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 419.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 418.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 415.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 412.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 408.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 406.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 405.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 403.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 403.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 403.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 399.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 393.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 392.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 391.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 388.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 386.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 381.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 381.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 377.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 372.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 372.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 371.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 370.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 369.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 369.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 368.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 365.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 363.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 358.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 358.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 357.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 353.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 352.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 351.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 348.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 346.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 346.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 344.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 343.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 338.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 336.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 334.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 332.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 332.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 331.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 330.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 326.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 322.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 322.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 322.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 322.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 322.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 320.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 320.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 318.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 316.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 314.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 314.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 313.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 313.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 312.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 312.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 311.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 309.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 307.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 305.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 303.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 303.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 303.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 301.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 298.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 294.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 290.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 289.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 289.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 289.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 288.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 287.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 284.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 280.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 280.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 279.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 279.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 276.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 275.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 271.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 264.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 261.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 261.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 260.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 260.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 260.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 256.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 255.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 252.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 249.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 249.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 249.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 248.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 243.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 242.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 242.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 238.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 232.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 230.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 230.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 227.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 225.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 223.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 218.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 215.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 215.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 214.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 213.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 204.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 201.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 194.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 179.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 162.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 159.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 158.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 151.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1092.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1092.5
FF:10151-102I7 76 years, female 1092.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

435.7
Pig sample Sample description nTPM
Amygdala
nTPM: 435.7
Samples: 4

Max nTPM: 673.9
Min nTPM: 292.3
Sample A Female 673.9
Sample B Female 292.3
Sample C Male 380.9
Sample D Male 395.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1543.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1543.4
Samples: 4

Max nTPM: 1675.5
Min nTPM: 1481.5
Sample A Male 1675.5
Sample B Male 1481.5
Sample C Female 1523.9
Sample D Female 1492.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

30.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 30.0
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 30.5
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 29.5

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