MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.0 nTPM
HPA Brain:102.9 nTPM
GTEx:121.0 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:43.4 nTPM
Allen mouse:5.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.5
2586 Male, age 75, left hemisphere 112.7
2666 Male, age 74, left hemisphere 100.0
2828 Female, age 72, unknown 91.1
1827 Male, age 72, unknown 84.8
2411 Female, age 72, unknown 81.0
2019 Male, age 18, unknown 77.4
1833 Male, age 53, unknown 76.1
2219 Male, age 76, both hemispheres 73.1
1870 Female, age 42, unknown 72.6
1830 Male, age 51, unknown 66.3
Dorsal raphe nucleus
nTPM: 84.7
2047 Male, age 72, unknown 101.4
1828 Male, age 53, unknown 96.3
2750 Male, age 76, both hemispheres 84.4
2298 Female, age 72, unknown 76.4
2016 Female, age 72, unknown 64.9
Inferior colliculus
nTPM: 57.0
1848 Female, age 42, unknown 63.5
2849 Male, age 72, unknown 59.1
1890 Male, age 53, unknown 55.7
2097 Female, age 72, unknown 49.7
Median raphe nucleus
nTPM: 100.6
2220 Male, age 76, midline 100.6
Periaquaductal grey, anterior
nTPM: 85.9
1795 Male, age 51, unknown 93.6
1947 Male, age 18, unknown 87.1
2502 Female, age 75, unknown 77.1
Periaquaductal grey, dorsal
nTPM: 64.0
2850 Male, age 76, both hemispheres 78.6
1840 Male, age 53, unknown 60.9
2464 Female, age 72, unknown 59.7
1831 Male, age 72, unknown 56.5
Periaquaductal grey, lateral
nTPM: 61.6
2140 Male, age 76, both hemispheres 64.5
2272 Male, age 74, both hemispheres 60.7
2053 Male, age 18, unknown 59.8
Pretectal area
nTPM: 78.2
1817 Female, age 42, unknown 97.7
1816 Male, age 51, unknown 94.4
2007 Male, age 72, unknown 92.4
1944 Female, age 72, unknown 82.7
2667 Female, age 75, unknown 82.5
1815 Male, age 53, unknown 80.4
2825 Male, age 18, unknown 74.9
2224 Female, age 72, unknown 71.2
2316 Male, age 76, right hemisphere 70.1
2407 Male, age 75, both hemispheres 61.4
2273 Male, age 74, both hemispheres 52.3
Red nucleus
nTPM: 88.1
2725 Female, age 75, unknown 108.7
2588 Male, age 74, left hemisphere 95.5
1821 Female, age 72, unknown 93.8
2769 Male, age 72, unknown 91.2
2584 Male, age 75, left hemisphere 90.3
1954 Female, age 42, unknown 89.0
2823 Male, age 76, right hemisphere 84.9
1904 Male, age 53, unknown 84.3
2227 Male, age 72, unknown 82.0
1865 Male, age 51, unknown 81.0
2503 Female, age 72, unknown 79.9
2785 Male, age 18, unknown 76.8
Substantia nigra
nTPM: 102.9
1916 Female, age 42, unknown 152.7
2665 Male, age 74, both hemispheres 118.3
1851 Male, age 51, unknown 114.8
1941 Male, age 53, unknown 112.3
2699 Male, age 18, unknown 108.3
2583 Male, age 75, right hemisphere 95.2
1889 Female, age 72, unknown 90.1
2241 Male, age 72, unknown 87.2
2409 Female, age 72, unknown 83.8
2590 Female, age 75, unknown 66.4
Superior colliculus
nTPM: 71.6
2668 Female, age 75, unknown 89.6
2261 Male, age 18, unknown 83.5
2664 Male, age 75, both hemispheres 81.8
1796 Male, age 53, unknown 77.0
2087 Female, age 72, unknown 75.0
2587 Male, age 74, left hemisphere 67.0
1839 Male, age 51, unknown 65.2
1995 Male, age 72, unknown 60.5
1895 Male, age 76, right hemisphere 58.7
1913 Female, age 42, unknown 57.8
Ventral tegmental area
nTPM: 96.9
2410 Female, age 72, unknown 114.3
1915 Female, age 42, unknown 112.7
2218 Male, age 76, both hemispheres 98.1
1942 Male, age 51, unknown 91.8
2223 Female, age 72, unknown 85.8
2021 Male, age 53, unknown 78.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 121.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.0
Samples: 183

Max nTPM: 237.5
Min nTPM: 56.6
Std nTPM: 37.4
Median nTPM: 116.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 237.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 237.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 213.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 207.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 205.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 194.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 194.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 188.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 183.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 183.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 181.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.4
Samples: 4

Max nTPM: 97.9
Min nTPM: 56.0
Sample A Female 97.9
Sample B Female 57.2
Sample C Male 90.4
Sample D Male 56.0
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 80.5
Min nTPM: 49.6
Sample A Female 80.5
Sample B Female 63.7
Sample C Male 49.6
Sample D Male 50.1
Periaqueductal gray
nTPM: 57.1
Samples: 3

Max nTPM: 68.2
Min nTPM: 48.8
Sample B Female 54.3
Sample C Male 68.2
Sample D Male 48.8
Superior colliculi
nTPM: 60.2
Samples: 4

Max nTPM: 84.3
Min nTPM: 45.7
Sample A Female 84.3
Sample B Female 45.7
Sample C Male 53.3
Sample D Male 57.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 52.7
Min nTPM: 34.2
Sample A Male 52.7
Sample B Male 40.8
Sample C Female 34.2
Sample D Female 46.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68522518 Antisense, RP_050118_02_B12, Mouse strain C57BL/6J (56 days, male) 5.8

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