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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:78.0 nTPM
HPA Brain:203.6 nTPM
GTEx:78.0 nTPM
FANTOM5:108.1 Scaled Tags Per Million
Pig:111.0 nTPM
Mouse:194.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.6
Sample id Sample description nTPM
Amygdala
nTPM: 65.5
2517 Female, age 94, left hemisphere 119.9
1987 Female, age 91, left hemisphere 101.2
2514 Male, age 75, right hemisphere 61.0
2695 Female, age 67, right hemisphere 22.8
2814 Male, age 76, right hemisphere 22.7
Basal amygdala
nTPM: 179.1
2243 Female, age 91, right hemisphere 340.7
2685 Female, age 94, left hemisphere 223.2
2827 Female, age 67, right hemisphere 173.9
2110 Male, age 80, left hemisphere 162.0
2609 Male, age 75, right hemisphere 90.7
1955 Male, age 76, both hemispheres 84.1
Central amygdala
nTPM: 88.2
2239 Male, age 80, left hemisphere 155.9
2826 Female, age 94, left hemisphere 110.6
2701 Female, age 91, right hemisphere 105.5
2515 Male, age 75, right hemisphere 49.0
1905 Male, age 76, both hemispheres 19.8
Corticomedial amygdala
nTPM: 203.6
2242 Female, age 91, right hemisphere 302.3
2535 Female, age 67, right hemisphere 279.0
2429 Female, age 94, left hemisphere 226.9
2829 Male, age 80, left hemisphere 219.3
2240 Male, age 76, both hemispheres 107.3
2428 Male, age 75, right hemisphere 86.9
Lateral amygdala
nTPM: 101.0
2255 Female, age 91, right hemisphere 148.6
2256 Male, age 80, left hemisphere 127.5
2534 Female, age 94, left hemisphere 120.8
2830 Female, age 67, right hemisphere 95.7
1883 Male, age 76, both hemispheres 64.6
2516 Male, age 75, right hemisphere 49.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 78.0
Samples: 181

Max nTPM: 176.0
Min nTPM: 10.1
Std nTPM: 33.2
Median nTPM: 76.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 176.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 167.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 153.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 151.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 150.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 148.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 148.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 142.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 141.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 140.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 130.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 127.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 125.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 124.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 119.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 119.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 116.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 115.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 111.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 111.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 111.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 109.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 109.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 109.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 108.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 107.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 107.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 107.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 106.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 104.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 104.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 103.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 103.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 103.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 102.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 101.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 101.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 98.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 97.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 97.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 97.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 95.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 94.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 93.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 92.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 92.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 91.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 91.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 90.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 89.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 88.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 88.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 87.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 85.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 85.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 85.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 85.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 84.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 82.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 81.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 81.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 80.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 80.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 79.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 78.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 77.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 77.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 76.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 76.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 74.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 74.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 73.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 71.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 70.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 69.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 69.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 69.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 65.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 65.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 65.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 64.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 62.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 62.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 62.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 62.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 60.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 60.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 58.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 57.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 57.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 57.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 53.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 53.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 53.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 50.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 50.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 49.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 48.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 47.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 46.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 45.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 45.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 42.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 41.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 39.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 39.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 38.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 37.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 37.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 36.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 36.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 36.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 34.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 33.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 31.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 29.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 24.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 20.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 19.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 12.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 10.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 108.1
FF:10151-102I7 76 years, female 108.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
Pig sample Sample description nTPM
Amygdala
nTPM: 111.0
Samples: 4

Max nTPM: 163.7
Min nTPM: 60.2
Sample A Female 163.7
Sample B Female 60.2
Sample C Male 99.6
Sample D Male 120.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.4
Samples: 4

Max nTPM: 204.5
Min nTPM: 183.8
Sample A Male 183.8
Sample B Male 199.7
Sample C Female 189.5
Sample D Female 204.5

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