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NAP1L1
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • NAP1L1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:213.0 nTPM
FANTOM5:309.0 Scaled Tags Per Million
Pig:191.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA028861
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 213.0
Samples: 300

Max nTPM: 734.9
Min nTPM: 123.3
Std nTPM: 55.1
Median nTPM: 203.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 734.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 473.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 405.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 356.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 349.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 342.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 336.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 336.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 335.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 335.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 315.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 314.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 313.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 304.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 303.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 300.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 297.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 293.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 292.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 290.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 288.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 287.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 286.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 281.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 280.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 278.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 275.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 268.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 267.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 266.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 264.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 263.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 263.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 261.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 260.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 260.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 260.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 260.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 260.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 255.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 255.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 254.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 254.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 252.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 251.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 250.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 249.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 249.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 249.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 248.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 248.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 248.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 247.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 247.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 247.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 244.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 244.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 244.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 243.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 242.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 241.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 240.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 240.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 239.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 238.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 238.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 235.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 235.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 234.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 234.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 234.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 233.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 233.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 233.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 232.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 232.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 232.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 231.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 231.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 231.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 230.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 229.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 229.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 229.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 228.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 227.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 227.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 226.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 226.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 226.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 226.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 225.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 225.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 224.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 224.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 224.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 223.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 223.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 223.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 222.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 222.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 221.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 221.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 221.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 221.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 220.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 219.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 219.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 219.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 218.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 218.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 218.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 216.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 216.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 216.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 215.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 215.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 215.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 214.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 213.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 213.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 212.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 212.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 212.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 212.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 212.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 211.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 210.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 210.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 210.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 210.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 210.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 209.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 208.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 208.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 207.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 207.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 207.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 206.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 206.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 206.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 205.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 205.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 205.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 205.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 204.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 204.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 204.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 204.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 204.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 203.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 203.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 203.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 203.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 203.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 203.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 202.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 202.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 202.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 202.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 202.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 202.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 201.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 201.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 201.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 200.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 200.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 197.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 197.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 197.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 197.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 197.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 196.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 196.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 196.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 196.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 195.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 195.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 195.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 195.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 195.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 194.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 194.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 194.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 194.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 193.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 192.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 192.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 191.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 190.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 190.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 189.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 188.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 188.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 187.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 187.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 187.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 187.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 187.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 186.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 185.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 185.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 185.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 185.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 185.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 184.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 184.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 184.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 183.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 183.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 182.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 182.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 182.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 181.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 181.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 181.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 181.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 181.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 180.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 180.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 180.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 179.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 178.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 178.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 178.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 178.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 177.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 177.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 177.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 177.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 176.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 176.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 175.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 175.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 175.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 175.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 174.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 174.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 174.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 174.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 173.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 173.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 173.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 172.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 171.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 171.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 171.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 171.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 171.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 171.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 171.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 171.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 170.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 170.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 169.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 169.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 169.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 168.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 167.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 167.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 167.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 166.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 166.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 165.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 165.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 164.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 162.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 161.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 161.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 160.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 160.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 160.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 158.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 158.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 158.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 157.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 157.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 157.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 157.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 156.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 156.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 155.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 155.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 155.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 154.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 154.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 152.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 151.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 149.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 149.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 147.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 147.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 146.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 146.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 145.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 145.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 143.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 138.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 123.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 309.0
FF:10164-103B2 76 years, female 309.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.0
Pig sample Sample description nTPM
Caudate
nTPM: 191.0
Samples: 4

Max nTPM: 204.7
Min nTPM: 160.9
Sample A Female 195.1
Sample B Female 160.9
Sample C Male 204.7
Sample D Male 203.2

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