MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:322.3 nTPM
HPA Brain:286.1 nTPM
GTEx:322.3 nTPM
FANTOM5:371.8 Scaled Tags Per Million
Pig:241.8 nTPM
Mouse:202.1 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 286.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 250.4
2666 Male, age 74, left hemisphere 321.5
2586 Male, age 75, left hemisphere 273.7
1827 Male, age 72, unknown 255.5
2411 Female, age 72, unknown 254.8
1833 Male, age 53, unknown 252.4
1830 Male, age 51, unknown 247.3
1870 Female, age 42, unknown 244.2
2828 Female, age 72, unknown 236.8
2019 Male, age 18, unknown 228.9
2219 Male, age 76, both hemispheres 188.4
Dorsal raphe nucleus
nTPM: 233.4
2016 Female, age 72, unknown 271.8
1828 Male, age 53, unknown 251.7
2047 Male, age 72, unknown 224.3
2750 Male, age 76, both hemispheres 222.3
2298 Female, age 72, unknown 197.0
Inferior colliculus
nTPM: 211.7
1890 Male, age 53, unknown 224.3
1848 Female, age 42, unknown 222.0
2849 Male, age 72, unknown 204.3
2097 Female, age 72, unknown 196.1
Median raphe nucleus
nTPM: 209.1
2220 Male, age 76, midline 209.1
Periaquaductal grey, anterior
nTPM: 259.8
2502 Female, age 75, unknown 285.7
1947 Male, age 18, unknown 259.8
1795 Male, age 51, unknown 233.8
Periaquaductal grey, dorsal
nTPM: 220.6
1831 Male, age 72, unknown 242.3
2850 Male, age 76, both hemispheres 220.8
2464 Female, age 72, unknown 213.5
1840 Male, age 53, unknown 205.7
Periaquaductal grey, lateral
nTPM: 218.1
2053 Male, age 18, unknown 252.4
2140 Male, age 76, both hemispheres 205.5
2272 Male, age 74, both hemispheres 196.3
Pretectal area
nTPM: 225.7
1815 Male, age 53, unknown 250.6
2407 Male, age 75, both hemispheres 243.0
2825 Male, age 18, unknown 238.7
1816 Male, age 51, unknown 234.1
2316 Male, age 76, right hemisphere 230.4
1944 Female, age 72, unknown 227.5
2007 Male, age 72, unknown 226.7
1817 Female, age 42, unknown 222.9
2224 Female, age 72, unknown 206.1
2273 Male, age 74, both hemispheres 202.9
2667 Female, age 75, unknown 199.9
Red nucleus
nTPM: 286.1
2588 Male, age 74, left hemisphere 349.1
2503 Female, age 72, unknown 335.3
2584 Male, age 75, left hemisphere 322.8
1821 Female, age 72, unknown 314.1
2725 Female, age 75, unknown 296.7
1865 Male, age 51, unknown 282.1
1904 Male, age 53, unknown 270.7
2823 Male, age 76, right hemisphere 264.3
1954 Female, age 42, unknown 262.5
2769 Male, age 72, unknown 253.8
2227 Male, age 72, unknown 246.9
2785 Male, age 18, unknown 235.0
Substantia nigra
nTPM: 272.7
2241 Male, age 72, unknown 305.9
2699 Male, age 18, unknown 286.4
2409 Female, age 72, unknown 283.6
1851 Male, age 51, unknown 281.4
2590 Female, age 75, unknown 274.6
2665 Male, age 74, both hemispheres 272.2
2583 Male, age 75, right hemisphere 260.9
1941 Male, age 53, unknown 259.6
1889 Female, age 72, unknown 253.4
1916 Female, age 42, unknown 248.4
Superior colliculus
nTPM: 242.8
2587 Male, age 74, left hemisphere 300.8
1995 Male, age 72, unknown 259.7
1913 Female, age 42, unknown 255.6
2664 Male, age 75, both hemispheres 247.6
2261 Male, age 18, unknown 242.9
1839 Male, age 51, unknown 239.8
2668 Female, age 75, unknown 233.9
1796 Male, age 53, unknown 221.9
2087 Female, age 72, unknown 216.7
1895 Male, age 76, right hemisphere 209.3
Ventral tegmental area
nTPM: 249.4
2223 Female, age 72, unknown 270.0
1942 Male, age 51, unknown 261.3
2410 Female, age 72, unknown 251.2
2021 Male, age 53, unknown 244.9
1915 Female, age 42, unknown 242.5
2218 Male, age 76, both hemispheres 226.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 322.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 322.3
Samples: 183

Max nTPM: 842.9
Min nTPM: 133.4
Std nTPM: 118.9
Median nTPM: 299.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 842.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 725.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 643.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 623.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 600.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 589.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 574.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 566.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 562.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 550.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 525.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 371.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 371.8
FF:10158-103A5 76 years, female 371.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 217.5
Samples: 4

Max nTPM: 246.6
Min nTPM: 196.6
Sample A Female 246.6
Sample B Female 196.6
Sample C Male 208.5
Sample D Male 218.1
Midbrain
nTPM: 241.8
Samples: 4

Max nTPM: 399.9
Min nTPM: 152.4
Sample A Female 399.9
Sample B Female 231.6
Sample C Male 183.2
Sample D Male 152.4
Periaqueductal gray
nTPM: 190.0
Samples: 3

Max nTPM: 200.5
Min nTPM: 181.2
Sample B Female 181.2
Sample C Male 200.5
Sample D Male 188.4
Superior colliculi
nTPM: 198.7
Samples: 4

Max nTPM: 207.0
Min nTPM: 184.4
Sample A Female 203.2
Sample B Female 184.4
Sample C Male 207.0
Sample D Male 200.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 202.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 202.1
Samples: 4

Max nTPM: 208.1
Min nTPM: 199.3
Sample A Male 200.7
Sample B Male 208.1
Sample C Female 199.3
Sample D Female 200.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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